Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04860

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Starch soluble; autoclaved 2.5 mg/ml (C)
1,354,392	-		ABI39_RS04855	0.84	+0.9
1,354,431	-		ABI39_RS04855	0.87	-0.8
1,354,468	+				+0.7
1,354,496	+				-0.3
1,354,581	+				+1.2
1,354,582	-				-0.4
1,354,616	-				-0.5
1,354,627	-				+0.1
1,354,627	-				+1.0
1,354,731	-				-0.2
1,354,756	+				-0.3
1,354,764	-				-0.1
1,354,764	-				-0.5
1,354,765	+				-0.3
1,354,765	+				-0.6
1,354,766	-				-0.7
1,354,766	-				-0.4
1,354,788	-				+0.1
1,354,836	+				+1.5
1,354,862	-				-0.8
1,354,866	-				+0.7
1,354,922	-				+0.6
1,355,118	+				-1.4
1,355,204	-				-0.3
1,355,210	-				+0.1
1,355,219	-				-0.5
1,355,247	-				-1.7
1,355,474	-		ABI39_RS04860	0.23	-4.7
1,355,566	-		ABI39_RS04860	0.31	-5.6
1,356,081	-		ABI39_RS04860	0.77	+0.0
1,356,539	-		ABI39_RS04865	0.67	-1.7
1,356,543	-		ABI39_RS04865	0.68	-0.1
1,356,743	+				-0.9
1,356,753	+				+0.6
1,356,754	-				+0.1
1,356,775	+				-2.0
1,356,776	-				-2.6
1,356,787	-				-1.1
1,356,789	-				-0.6
1,356,808	+				-0.5
1,356,978	-				-1.6
1,357,000	-				-1.7
1,357,003	+				+1.5
1,357,004	-				+0.6
1,357,004	-				-0.2
1,357,034	-				+0.9
1,357,102	-				+1.8
1,357,166	-		ABI39_RS04870	0.10	+0.2
1,357,185	+		ABI39_RS04870	0.12	+0.4
1,357,185	+		ABI39_RS04870	0.12	+0.5
1,357,185	+		ABI39_RS04870	0.12	+1.1
1,357,326	+		ABI39_RS04870	0.24	-0.3