Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01355 and ABI39_RS01360 are separated by 156 nucleotides ABI39_RS01360 and ABI39_RS01365 are separated by 215 nucleotides
ABI39_RS01355: ABI39_RS01355 - malate dehydrogenase, at 417,569 to 418,510
_RS01355
ABI39_RS01360: ABI39_RS01360 - hypothetical protein, at 418,667 to 419,539
_RS01360
ABI39_RS01365: ABI39_RS01365 - TolC family protein, at 419,755 to 421,218
_RS01365
Position (kb) 418
419
420 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 417.772 kb on + strand, within ABI39_RS01355 at 417.878 kb on - strand, within ABI39_RS01355 at 417.942 kb on + strand, within ABI39_RS01355 at 417.973 kb on + strand, within ABI39_RS01355 at 417.974 kb on - strand, within ABI39_RS01355 at 418.129 kb on - strand, within ABI39_RS01355 at 418.129 kb on - strand, within ABI39_RS01355 at 418.156 kb on + strand, within ABI39_RS01355 at 418.331 kb on + strand, within ABI39_RS01355 at 418.331 kb on + strand, within ABI39_RS01355 at 418.421 kb on + strand at 418.468 kb on + strand at 418.475 kb on + strand at 418.475 kb on + strand at 418.490 kb on + strand at 418.554 kb on + strand at 418.628 kb on + strand at 418.628 kb on + strand at 418.633 kb on + strand at 418.638 kb on + strand at 418.667 kb on - strand at 418.816 kb on + strand, within ABI39_RS01360 at 419.002 kb on - strand, within ABI39_RS01360 at 419.009 kb on + strand, within ABI39_RS01360 at 419.010 kb on - strand, within ABI39_RS01360 at 419.022 kb on + strand, within ABI39_RS01360 at 419.188 kb on - strand, within ABI39_RS01360 at 419.188 kb on - strand, within ABI39_RS01360 at 419.276 kb on - strand, within ABI39_RS01360 at 419.301 kb on + strand, within ABI39_RS01360 at 419.304 kb on - strand, within ABI39_RS01360 at 419.307 kb on + strand, within ABI39_RS01360 at 419.308 kb on - strand, within ABI39_RS01360 at 419.308 kb on - strand, within ABI39_RS01360 at 419.334 kb on + strand, within ABI39_RS01360 at 419.388 kb on - strand, within ABI39_RS01360 at 419.406 kb on + strand, within ABI39_RS01360 at 419.407 kb on - strand, within ABI39_RS01360 at 419.439 kb on + strand, within ABI39_RS01360 at 419.478 kb on - strand at 419.637 kb on + strand at 419.752 kb on - strand at 419.963 kb on - strand, within ABI39_RS01365 at 419.963 kb on - strand, within ABI39_RS01365 at 419.963 kb on - strand, within ABI39_RS01365 at 419.965 kb on - strand, within ABI39_RS01365 at 420.049 kb on - strand, within ABI39_RS01365 at 420.101 kb on + strand, within ABI39_RS01365 at 420.432 kb on - strand, within ABI39_RS01365 at 420.432 kb on - strand, within ABI39_RS01365
Per-strain Table
Position Strand Gene LocusTag Fraction Starch soluble; autoclaved 2.5 mg/ml (C) remove 417,772 + ABI39_RS01355 0.22 +0.2 417,878 - ABI39_RS01355 0.33 +1.2 417,942 + ABI39_RS01355 0.40 -0.2 417,973 + ABI39_RS01355 0.43 +0.9 417,974 - ABI39_RS01355 0.43 +0.7 418,129 - ABI39_RS01355 0.59 -0.2 418,129 - ABI39_RS01355 0.59 +0.2 418,156 + ABI39_RS01355 0.62 -0.7 418,331 + ABI39_RS01355 0.81 +0.8 418,331 + ABI39_RS01355 0.81 -1.7 418,421 + +0.8 418,468 + +0.3 418,475 + -1.5 418,475 + +1.3 418,490 + +1.0 418,554 + -1.5 418,628 + -0.1 418,628 + +1.1 418,633 + -0.4 418,638 + -0.9 418,667 - -0.3 418,816 + ABI39_RS01360 0.17 -1.3 419,002 - ABI39_RS01360 0.38 -3.1 419,009 + ABI39_RS01360 0.39 -3.8 419,010 - ABI39_RS01360 0.39 -3.1 419,022 + ABI39_RS01360 0.41 -0.7 419,188 - ABI39_RS01360 0.60 -3.1 419,188 - ABI39_RS01360 0.60 -2.2 419,276 - ABI39_RS01360 0.70 -4.1 419,301 + ABI39_RS01360 0.73 -0.5 419,304 - ABI39_RS01360 0.73 -3.6 419,307 + ABI39_RS01360 0.73 -1.7 419,308 - ABI39_RS01360 0.73 -2.6 419,308 - ABI39_RS01360 0.73 -1.4 419,334 + ABI39_RS01360 0.76 -4.3 419,388 - ABI39_RS01360 0.83 -2.1 419,406 + ABI39_RS01360 0.85 -3.5 419,407 - ABI39_RS01360 0.85 -4.2 419,439 + ABI39_RS01360 0.88 -3.8 419,478 - -4.4 419,637 + -1.0 419,752 - +0.8 419,963 - ABI39_RS01365 0.14 +0.6 419,963 - ABI39_RS01365 0.14 -0.5 419,963 - ABI39_RS01365 0.14 -0.1 419,965 - ABI39_RS01365 0.14 -0.4 420,049 - ABI39_RS01365 0.20 -0.1 420,101 + ABI39_RS01365 0.24 +0.2 420,432 - ABI39_RS01365 0.46 +0.7 420,432 - ABI39_RS01365 0.46 +0.1
Or see this region's nucleotide sequence