Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS00520

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Starch soluble; autoclaved 2.5 mg/ml (C)
143,748	+				-1.5
143,748	+				-1.7
143,751	+				-0.9
143,754	-				-2.9
143,755	+				-1.0
143,756	-				-0.3
143,823	+				-1.6
143,888	-		ABI39_RS00515	0.21	-2.6
143,888	-		ABI39_RS00515	0.21	-2.1
143,972	-		ABI39_RS00515	0.36	-1.8
143,990	+		ABI39_RS00515	0.39	-2.5
144,234	-		ABI39_RS00515	0.83	-3.5
144,376	-				-2.7
144,499	-		ABI39_RS00520	0.13	-4.2
144,563	+		ABI39_RS00520	0.20	-1.7
144,580	-		ABI39_RS00520	0.22	-2.1
144,666	+		ABI39_RS00520	0.31	-2.6
144,692	+		ABI39_RS00520	0.34	-1.8
144,693	-		ABI39_RS00520	0.34	-1.7
144,693	-		ABI39_RS00520	0.34	-2.0
144,693	-		ABI39_RS00520	0.34	-3.1
144,696	+		ABI39_RS00520	0.35	-4.2
144,697	-		ABI39_RS00520	0.35	-3.8
144,697	-		ABI39_RS00520	0.35	-2.3
144,718	-		ABI39_RS00520	0.37	-0.8
144,763	-		ABI39_RS00520	0.42	-1.6
144,868	-		ABI39_RS00520	0.54	-1.1
144,960	+		ABI39_RS00520	0.64	-2.5
145,097	+		ABI39_RS00520	0.79	-1.1
145,263	-				+1.0
145,283	+				+0.2
145,288	-				-1.8
145,420	+				+1.5
145,662	+		ABI39_RS00525	0.18	+0.8
145,662	+		ABI39_RS00525	0.18	-0.1
145,663	-		ABI39_RS00525	0.18	-1.3
145,764	-		ABI39_RS00525	0.23	-0.3
145,786	+		ABI39_RS00525	0.24	-0.1
145,804	-		ABI39_RS00525	0.25	-1.1
145,804	-		ABI39_RS00525	0.25	+1.7
145,804	-		ABI39_RS00525	0.25	-1.0
146,003	-		ABI39_RS00525	0.35	-1.1
146,168	+		ABI39_RS00525	0.43	+0.1