Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS11105

Experiment: (+)-Arabinogalactan; autoclaved 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	(+)-Arabinogalactan; autoclaved 5 mg/ml (C)
2,969,266	+		ABI39_RS11095	0.44	+0.3
2,969,334	+		ABI39_RS11095	0.58	-0.3
2,969,433	+		ABI39_RS11095	0.80	+0.3
2,969,521	-				-0.1
2,969,539	-				-1.5
2,969,542	+				-0.4
2,969,713	-		ABI39_RS11100	0.27	+0.4
2,969,731	-		ABI39_RS11100	0.30	+0.2
2,969,806	-		ABI39_RS11100	0.41	+0.1
2,969,835	+		ABI39_RS11100	0.46	-0.5
2,969,862	+		ABI39_RS11100	0.50	+0.5
2,969,870	+		ABI39_RS11100	0.51	-0.1
2,969,871	-		ABI39_RS11100	0.51	+0.7
2,970,172	+				+0.5
2,970,173	-				+0.5
2,970,207	+				-0.2
2,970,208	-				+0.8
2,970,213	+				+0.2
2,970,326	-		ABI39_RS11105	0.14	-0.1
2,970,609	+		ABI39_RS11105	0.44	-0.1
2,970,778	+		ABI39_RS11105	0.62	+0.0
2,970,856	+		ABI39_RS11105	0.70	+1.5
2,970,857	-		ABI39_RS11105	0.70	+0.4
2,970,911	+		ABI39_RS11105	0.76	+0.6
2,970,915	+		ABI39_RS11105	0.76	+1.3
2,970,915	+		ABI39_RS11105	0.76	+0.6
2,970,916	-		ABI39_RS11105	0.76	-0.1
2,970,917	+		ABI39_RS11105	0.76	-0.3
2,970,939	-		ABI39_RS11105	0.79	+0.5
2,971,004	-		ABI39_RS11105	0.85	+1.1
2,971,084	-				-0.0
2,971,085	+				-0.3
2,971,105	+				-0.5
2,971,157	-				+0.7
2,971,160	+				+2.4
2,971,160	+				+1.4
2,971,297	-		ABI39_RS11110	0.13	+0.5
2,971,322	+		ABI39_RS11110	0.15	+0.5
2,971,323	-		ABI39_RS11110	0.15	-0.3
2,971,323	-		ABI39_RS11110	0.15	-0.2
2,971,323	-		ABI39_RS11110	0.15	-0.2
2,971,357	+		ABI39_RS11110	0.18	+0.1
2,971,358	-		ABI39_RS11110	0.18	-0.2
2,971,358	-		ABI39_RS11110	0.18	-0.1
2,971,369	-		ABI39_RS11110	0.19	-0.8
2,971,591	+		ABI39_RS11110	0.37	+0.3
2,971,592	-		ABI39_RS11110	0.37	+0.2
2,971,592	-		ABI39_RS11110	0.37	-0.2
2,971,601	-		ABI39_RS11110	0.38	+0.8
2,971,604	+		ABI39_RS11110	0.38	-0.8
2,971,773	+		ABI39_RS11110	0.52	+0.6
2,971,846	+		ABI39_RS11110	0.58	+1.0
2,971,948	+		ABI39_RS11110	0.67	+0.5
2,971,948	+		ABI39_RS11110	0.67	+0.5