Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ompA and matP are separated by 75 nucleotides matP and ycbZ are separated by 185 nucleotides
NOLOHH_21790: ompA - outer membrane protein A, at 4,282,753 to 4,283,793
ompA
NOLOHH_21795: matP - macrodomain Ter protein MatP, at 4,283,869 to 4,284,321
matP
NOLOHH_21800: ycbZ - Putative Lon protease-like protein, at 4,284,507 to 4,286,267
ycbZ
Position (kb) 4283
4284
4285 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4282.957 kb on + strand, within ompA at 4282.957 kb on + strand, within ompA at 4282.995 kb on + strand, within ompA at 4283.002 kb on + strand, within ompA at 4283.029 kb on + strand, within ompA at 4283.029 kb on + strand, within ompA at 4283.029 kb on + strand, within ompA at 4283.029 kb on + strand, within ompA at 4283.029 kb on + strand, within ompA at 4283.029 kb on + strand, within ompA at 4283.095 kb on + strand, within ompA at 4283.095 kb on + strand, within ompA at 4283.095 kb on + strand, within ompA at 4283.095 kb on + strand, within ompA at 4283.095 kb on + strand, within ompA at 4283.133 kb on + strand, within ompA at 4283.146 kb on + strand, within ompA at 4283.151 kb on + strand, within ompA at 4283.348 kb on + strand, within ompA at 4283.381 kb on + strand, within ompA at 4283.476 kb on + strand, within ompA at 4283.516 kb on + strand, within ompA at 4283.530 kb on + strand, within ompA at 4283.557 kb on + strand, within ompA at 4283.557 kb on + strand, within ompA at 4283.557 kb on + strand, within ompA at 4283.602 kb on + strand, within ompA at 4283.602 kb on + strand, within ompA at 4283.774 kb on + strand at 4283.774 kb on + strand at 4283.774 kb on + strand at 4283.791 kb on + strand at 4283.791 kb on + strand at 4283.928 kb on - strand, within matP at 4283.928 kb on - strand, within matP at 4284.139 kb on - strand, within matP at 4284.139 kb on - strand, within matP at 4284.227 kb on - strand, within matP at 4284.227 kb on - strand, within matP at 4284.227 kb on - strand, within matP at 4284.227 kb on - strand, within matP at 4284.273 kb on - strand, within matP at 4284.426 kb on - strand at 4284.453 kb on - strand at 4284.617 kb on + strand at 4284.680 kb on + strand at 4284.712 kb on - strand, within ycbZ at 4284.833 kb on + strand, within ycbZ at 4284.924 kb on - strand, within ycbZ at 4284.983 kb on + strand, within ycbZ at 4284.984 kb on - strand, within ycbZ at 4285.192 kb on - strand, within ycbZ at 4285.265 kb on + strand, within ycbZ at 4285.277 kb on + strand, within ycbZ at 4285.319 kb on + strand, within ycbZ
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 4,282,957 + ompA NOLOHH_21790 0.20 +0.3 4,282,957 + ompA NOLOHH_21790 0.20 -0.3 4,282,995 + ompA NOLOHH_21790 0.23 +1.2 4,283,002 + ompA NOLOHH_21790 0.24 -1.2 4,283,029 + ompA NOLOHH_21790 0.27 +1.0 4,283,029 + ompA NOLOHH_21790 0.27 +0.2 4,283,029 + ompA NOLOHH_21790 0.27 +0.1 4,283,029 + ompA NOLOHH_21790 0.27 +1.3 4,283,029 + ompA NOLOHH_21790 0.27 +0.1 4,283,029 + ompA NOLOHH_21790 0.27 -0.7 4,283,095 + ompA NOLOHH_21790 0.33 +2.3 4,283,095 + ompA NOLOHH_21790 0.33 +0.3 4,283,095 + ompA NOLOHH_21790 0.33 -0.7 4,283,095 + ompA NOLOHH_21790 0.33 -0.0 4,283,095 + ompA NOLOHH_21790 0.33 +0.3 4,283,133 + ompA NOLOHH_21790 0.37 +0.2 4,283,146 + ompA NOLOHH_21790 0.38 +0.9 4,283,151 + ompA NOLOHH_21790 0.38 +1.1 4,283,348 + ompA NOLOHH_21790 0.57 -1.2 4,283,381 + ompA NOLOHH_21790 0.60 +0.5 4,283,476 + ompA NOLOHH_21790 0.69 +0.4 4,283,516 + ompA NOLOHH_21790 0.73 +0.5 4,283,530 + ompA NOLOHH_21790 0.75 -1.2 4,283,557 + ompA NOLOHH_21790 0.77 -1.3 4,283,557 + ompA NOLOHH_21790 0.77 -0.3 4,283,557 + ompA NOLOHH_21790 0.77 -0.4 4,283,602 + ompA NOLOHH_21790 0.82 -0.1 4,283,602 + ompA NOLOHH_21790 0.82 -1.0 4,283,774 + +0.5 4,283,774 + +0.3 4,283,774 + -0.3 4,283,791 + +1.1 4,283,791 + +2.7 4,283,928 - matP NOLOHH_21795 0.13 -0.4 4,283,928 - matP NOLOHH_21795 0.13 -1.3 4,284,139 - matP NOLOHH_21795 0.60 +1.2 4,284,139 - matP NOLOHH_21795 0.60 -0.9 4,284,227 - matP NOLOHH_21795 0.79 +1.8 4,284,227 - matP NOLOHH_21795 0.79 -0.8 4,284,227 - matP NOLOHH_21795 0.79 -3.0 4,284,227 - matP NOLOHH_21795 0.79 -0.9 4,284,273 - matP NOLOHH_21795 0.89 +0.7 4,284,426 - -1.4 4,284,453 - +1.7 4,284,617 + +0.5 4,284,680 + +0.2 4,284,712 - ycbZ NOLOHH_21800 0.12 +0.8 4,284,833 + ycbZ NOLOHH_21800 0.19 +2.2 4,284,924 - ycbZ NOLOHH_21800 0.24 -0.3 4,284,983 + ycbZ NOLOHH_21800 0.27 +0.6 4,284,984 - ycbZ NOLOHH_21800 0.27 -0.3 4,285,192 - ycbZ NOLOHH_21800 0.39 -0.7 4,285,265 + ycbZ NOLOHH_21800 0.43 -0.6 4,285,277 + ycbZ NOLOHH_21800 0.44 +4.6 4,285,319 + ycbZ NOLOHH_21800 0.46 +1.2
Or see this region's nucleotide sequence