Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yceG and pabC are separated by 2 nucleotides pabC and fabF are separated by 119 nucleotides fabF and acpP are separated by 87 nucleotides acpP and fabG are separated by 210 nucleotides
NOLOHH_21085: yceG - cell division protein YceG, at 4,148,952 to 4,149,974
yceG
NOLOHH_21090: pabC - aminodeoxychorismate lyase, at 4,149,977 to 4,150,786
pabC
NOLOHH_21095: fabF - beta-ketoacyl-ACP synthase II, at 4,150,906 to 4,152,147
fabF
NOLOHH_21100: acpP - acyl carrier protein, at 4,152,235 to 4,152,471
acpP
NOLOHH_21105: fabG - 3-oxoacyl-ACP reductase FabG, at 4,152,682 to 4,153,416
fabG
Position (kb)
4150
4151
4152
4153 Strain fitness (log2 ratio)
-2
-1
0
1 at 4150.009 kb on - strand at 4150.015 kb on - strand at 4150.056 kb on - strand at 4150.344 kb on - strand, within pabC at 4150.649 kb on + strand, within pabC at 4150.650 kb on - strand, within pabC at 4150.848 kb on + strand at 4150.848 kb on + strand at 4150.885 kb on - strand at 4150.885 kb on - strand at 4150.908 kb on - strand at 4150.960 kb on - strand at 4150.971 kb on - strand at 4151.233 kb on - strand, within fabF at 4151.518 kb on - strand, within fabF at 4151.522 kb on - strand, within fabF at 4151.522 kb on - strand, within fabF at 4151.697 kb on - strand, within fabF at 4152.142 kb on - strand at 4152.627 kb on - strand at 4152.627 kb on - strand at 4152.630 kb on - strand at 4152.693 kb on - strand at 4152.693 kb on - strand at 4152.693 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 4,150,009 - -0.6 4,150,015 - +0.9 4,150,056 - +0.7 4,150,344 - pabC NOLOHH_21090 0.45 -0.2 4,150,649 + pabC NOLOHH_21090 0.83 -0.7 4,150,650 - pabC NOLOHH_21090 0.83 -0.1 4,150,848 + -0.4 4,150,848 + +0.8 4,150,885 - +0.3 4,150,885 - +0.2 4,150,908 - +0.2 4,150,960 - -1.1 4,150,971 - +1.1 4,151,233 - fabF NOLOHH_21095 0.26 -0.9 4,151,518 - fabF NOLOHH_21095 0.49 -0.3 4,151,522 - fabF NOLOHH_21095 0.50 +0.2 4,151,522 - fabF NOLOHH_21095 0.50 -0.8 4,151,697 - fabF NOLOHH_21095 0.64 -2.3 4,152,142 - -1.1 4,152,627 - -0.4 4,152,627 - +0.2 4,152,630 - -0.1 4,152,693 - +0.5 4,152,693 - -1.6 4,152,693 - -1.8
Or see this region's nucleotide sequence