Strain Fitness in Escherichia coli ECOR27 around NOLOHH_21095

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyceG and pabC are separated by 2 nucleotidespabC and fabF are separated by 119 nucleotidesfabF and acpP are separated by 87 nucleotidesacpP and fabG are separated by 210 nucleotides NOLOHH_21085: yceG - cell division protein YceG, at 4,148,952 to 4,149,974 yceG NOLOHH_21090: pabC - aminodeoxychorismate lyase, at 4,149,977 to 4,150,786 pabC NOLOHH_21095: fabF - beta-ketoacyl-ACP synthase II, at 4,150,906 to 4,152,147 fabF NOLOHH_21100: acpP - acyl carrier protein, at 4,152,235 to 4,152,471 acpP NOLOHH_21105: fabG - 3-oxoacyl-ACP reductase FabG, at 4,152,682 to 4,153,416 fabG Position (kb) 4150 4151 4152 4153Strain fitness (log2 ratio) -2 -1 0 1at 4150.009 kb on - strandat 4150.015 kb on - strandat 4150.056 kb on - strandat 4150.344 kb on - strand, within pabCat 4150.649 kb on + strand, within pabCat 4150.650 kb on - strand, within pabCat 4150.848 kb on + strandat 4150.848 kb on + strandat 4150.885 kb on - strandat 4150.885 kb on - strandat 4150.908 kb on - strandat 4150.960 kb on - strandat 4150.971 kb on - strandat 4151.233 kb on - strand, within fabFat 4151.518 kb on - strand, within fabFat 4151.522 kb on - strand, within fabFat 4151.522 kb on - strand, within fabFat 4151.697 kb on - strand, within fabFat 4152.142 kb on - strandat 4152.627 kb on - strandat 4152.627 kb on - strandat 4152.630 kb on - strandat 4152.693 kb on - strandat 4152.693 kb on - strandat 4152.693 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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4,150,009 - -0.6
4,150,015 - +0.9
4,150,056 - +0.7
4,150,344 - pabC NOLOHH_21090 0.45 -0.2
4,150,649 + pabC NOLOHH_21090 0.83 -0.7
4,150,650 - pabC NOLOHH_21090 0.83 -0.1
4,150,848 + -0.4
4,150,848 + +0.8
4,150,885 - +0.3
4,150,885 - +0.2
4,150,908 - +0.2
4,150,960 - -1.1
4,150,971 - +1.1
4,151,233 - fabF NOLOHH_21095 0.26 -0.9
4,151,518 - fabF NOLOHH_21095 0.49 -0.3
4,151,522 - fabF NOLOHH_21095 0.50 +0.2
4,151,522 - fabF NOLOHH_21095 0.50 -0.8
4,151,697 - fabF NOLOHH_21095 0.64 -2.3
4,152,142 - -1.1
4,152,627 - -0.4
4,152,627 - +0.2
4,152,630 - -0.1
4,152,693 - +0.5
4,152,693 - -1.6
4,152,693 - -1.8

Or see this region's nucleotide sequence