Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt potA and potB overlap by 17 nucleotides potB and potC overlap by 4 nucleotides potC and potD overlap by 4 nucleotides
NOLOHH_20935: potA - spermidine/putrescine ABC transporter ATP-binding protein PotA, at 4,118,465 to 4,119,601
potA
NOLOHH_20940: potB - spermidine/putrescine ABC transporter permease PotB, at 4,119,585 to 4,120,442
potB
NOLOHH_20945: potC - spermidine/putrescine ABC transporter permease PotC, at 4,120,439 to 4,121,233
potC
NOLOHH_20950: potD - spermidine/putrescine ABC transporter substrate-binding protein PotD, at 4,121,230 to 4,122,276
potD
Position (kb) 4119
4120
4121 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4118.629 kb on + strand, within potA at 4118.733 kb on - strand, within potA at 4118.756 kb on + strand, within potA at 4119.002 kb on + strand, within potA at 4119.058 kb on + strand, within potA at 4119.061 kb on + strand, within potA at 4119.170 kb on + strand, within potA at 4119.292 kb on + strand, within potA at 4119.292 kb on + strand, within potA at 4119.295 kb on + strand, within potA at 4119.295 kb on + strand, within potA at 4119.299 kb on + strand, within potA at 4119.424 kb on + strand, within potA at 4119.428 kb on + strand, within potA at 4119.428 kb on + strand, within potA at 4119.428 kb on + strand, within potA at 4119.428 kb on + strand, within potA at 4119.550 kb on + strand at 4119.599 kb on + strand at 4119.599 kb on + strand at 4119.741 kb on + strand, within potB at 4119.862 kb on + strand, within potB at 4120.251 kb on + strand, within potB at 4120.358 kb on + strand at 4120.358 kb on + strand at 4120.358 kb on + strand at 4120.493 kb on + strand at 4120.608 kb on + strand, within potC at 4120.843 kb on + strand, within potC at 4120.843 kb on + strand, within potC at 4121.010 kb on + strand, within potC at 4121.037 kb on + strand, within potC at 4121.037 kb on + strand, within potC at 4121.037 kb on + strand, within potC at 4121.069 kb on + strand, within potC at 4121.069 kb on + strand, within potC at 4121.069 kb on + strand, within potC at 4121.145 kb on + strand, within potC at 4121.145 kb on + strand, within potC at 4121.148 kb on + strand, within potC at 4121.172 kb on + strand at 4121.172 kb on + strand at 4121.188 kb on + strand at 4121.212 kb on + strand at 4121.317 kb on + strand at 4121.391 kb on + strand, within potD at 4121.395 kb on + strand, within potD at 4121.395 kb on + strand, within potD at 4121.395 kb on + strand, within potD at 4121.425 kb on + strand, within potD at 4121.425 kb on + strand, within potD
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 4,118,629 + potA NOLOHH_20935 0.14 -1.6 4,118,733 - potA NOLOHH_20935 0.24 -1.3 4,118,756 + potA NOLOHH_20935 0.26 +0.1 4,119,002 + potA NOLOHH_20935 0.47 +0.1 4,119,058 + potA NOLOHH_20935 0.52 -1.2 4,119,061 + potA NOLOHH_20935 0.52 +0.4 4,119,170 + potA NOLOHH_20935 0.62 +0.5 4,119,292 + potA NOLOHH_20935 0.73 +2.3 4,119,292 + potA NOLOHH_20935 0.73 -0.3 4,119,295 + potA NOLOHH_20935 0.73 +0.4 4,119,295 + potA NOLOHH_20935 0.73 +0.5 4,119,299 + potA NOLOHH_20935 0.73 +0.0 4,119,424 + potA NOLOHH_20935 0.84 -0.5 4,119,428 + potA NOLOHH_20935 0.85 -1.0 4,119,428 + potA NOLOHH_20935 0.85 -0.4 4,119,428 + potA NOLOHH_20935 0.85 +0.5 4,119,428 + potA NOLOHH_20935 0.85 -0.3 4,119,550 + +1.5 4,119,599 + +1.5 4,119,599 + -0.9 4,119,741 + potB NOLOHH_20940 0.18 -0.3 4,119,862 + potB NOLOHH_20940 0.32 -0.3 4,120,251 + potB NOLOHH_20940 0.78 -1.1 4,120,358 + -0.0 4,120,358 + -0.3 4,120,358 + +1.3 4,120,493 + +0.4 4,120,608 + potC NOLOHH_20945 0.21 -1.1 4,120,843 + potC NOLOHH_20945 0.51 -0.8 4,120,843 + potC NOLOHH_20945 0.51 +0.5 4,121,010 + potC NOLOHH_20945 0.72 -0.2 4,121,037 + potC NOLOHH_20945 0.75 +1.0 4,121,037 + potC NOLOHH_20945 0.75 -2.2 4,121,037 + potC NOLOHH_20945 0.75 -0.5 4,121,069 + potC NOLOHH_20945 0.79 -0.5 4,121,069 + potC NOLOHH_20945 0.79 +1.2 4,121,069 + potC NOLOHH_20945 0.79 -2.3 4,121,145 + potC NOLOHH_20945 0.89 +0.3 4,121,145 + potC NOLOHH_20945 0.89 +0.5 4,121,148 + potC NOLOHH_20945 0.89 +2.1 4,121,172 + -1.0 4,121,172 + +0.5 4,121,188 + +0.5 4,121,212 + -1.1 4,121,317 + -0.1 4,121,391 + potD NOLOHH_20950 0.15 -0.9 4,121,395 + potD NOLOHH_20950 0.16 -1.9 4,121,395 + potD NOLOHH_20950 0.16 +0.1 4,121,395 + potD NOLOHH_20950 0.16 +0.4 4,121,425 + potD NOLOHH_20950 0.19 -0.5 4,121,425 + potD NOLOHH_20950 0.19 -0.1
Or see this region's nucleotide sequence