Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ldcA and nhaP2 are separated by 94 nucleotides nhaP2 and NOLOHH_20715 are separated by 133 nucleotides NOLOHH_20715 and dadX are separated by 103 nucleotides
NOLOHH_20705: ldcA - muramoyltetrapeptide carboxypeptidase, at 4,076,067 to 4,076,981
ldcA
NOLOHH_20710: nhaP2 - potassium/proton antiporter, at 4,077,076 to 4,078,812
nhaP2
NOLOHH_20715: NOLOHH_20715 - hypothetical protein, at 4,078,946 to 4,079,095
_20715
NOLOHH_20720: dadX - catabolic alanine racemase DadX, at 4,079,199 to 4,080,269
dadX
Position (kb)
4077
4078
4079 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4076.083 kb on + strand at 4076.109 kb on - strand at 4077.005 kb on + strand at 4077.028 kb on + strand at 4077.040 kb on + strand at 4077.040 kb on + strand at 4077.041 kb on - strand at 4077.043 kb on - strand at 4077.056 kb on + strand at 4077.144 kb on + strand at 4077.144 kb on + strand at 4077.266 kb on + strand, within nhaP2 at 4077.266 kb on + strand, within nhaP2 at 4077.270 kb on + strand, within nhaP2 at 4077.270 kb on + strand, within nhaP2 at 4077.694 kb on + strand, within nhaP2 at 4078.097 kb on + strand, within nhaP2 at 4078.383 kb on + strand, within nhaP2 at 4078.401 kb on + strand, within nhaP2 at 4078.613 kb on + strand, within nhaP2 at 4078.615 kb on + strand, within nhaP2 at 4078.615 kb on + strand, within nhaP2 at 4078.758 kb on + strand at 4078.981 kb on + strand, within NOLOHH_20715 at 4079.065 kb on + strand, within NOLOHH_20715 at 4079.124 kb on - strand at 4079.124 kb on - strand at 4079.191 kb on - strand at 4079.499 kb on - strand, within dadX at 4079.501 kb on - strand, within dadX at 4079.584 kb on - strand, within dadX at 4079.640 kb on - strand, within dadX
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 4,076,083 + +1.1 4,076,109 - +0.7 4,077,005 + -0.6 4,077,028 + +3.0 4,077,040 + +0.5 4,077,040 + -0.1 4,077,041 - +1.1 4,077,043 - -1.0 4,077,056 + +0.9 4,077,144 + -0.1 4,077,144 + +1.9 4,077,266 + nhaP2 NOLOHH_20710 0.11 -0.4 4,077,266 + nhaP2 NOLOHH_20710 0.11 -1.5 4,077,270 + nhaP2 NOLOHH_20710 0.11 +1.1 4,077,270 + nhaP2 NOLOHH_20710 0.11 -0.1 4,077,694 + nhaP2 NOLOHH_20710 0.36 -0.2 4,078,097 + nhaP2 NOLOHH_20710 0.59 -0.5 4,078,383 + nhaP2 NOLOHH_20710 0.75 +0.7 4,078,401 + nhaP2 NOLOHH_20710 0.76 -0.4 4,078,613 + nhaP2 NOLOHH_20710 0.88 -0.3 4,078,615 + nhaP2 NOLOHH_20710 0.89 +0.3 4,078,615 + nhaP2 NOLOHH_20710 0.89 -0.5 4,078,758 + +0.5 4,078,981 + NOLOHH_20715 0.23 -0.6 4,079,065 + NOLOHH_20715 0.79 -0.4 4,079,124 - -0.3 4,079,124 - -1.5 4,079,191 - +0.7 4,079,499 - dadX NOLOHH_20720 0.28 +0.6 4,079,501 - dadX NOLOHH_20720 0.28 +0.9 4,079,584 - dadX NOLOHH_20720 0.36 +0.5 4,079,640 - dadX NOLOHH_20720 0.41 +1.1
Or see this region's nucleotide sequence