Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt osmC and bdm are separated by 345 nucleotides bdm and sra are separated by 101 nucleotides sra and maeA are separated by 156 nucleotides maeA and adhP are separated by 133 nucleotides
NOLOHH_19020: osmC - peroxiredoxin OsmC, at 3,738,059 to 3,738,490
osmC
NOLOHH_19025: bdm - biofilm-dependent modulation protein, at 3,738,836 to 3,739,051
bdm
NOLOHH_19030: sra - stationary-phase-induced ribosome-associated protein, at 3,739,153 to 3,739,290
sra
NOLOHH_19035: maeA - malate dehydrogenase, at 3,739,447 to 3,741,144
maeA
NOLOHH_19040: adhP - alcohol dehydrogenase AdhP, at 3,741,278 to 3,742,288
adhP
Position (kb)
3739
3740
3741
3742 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3738.511 kb on - strand at 3739.019 kb on + strand, within bdm at 3739.075 kb on + strand at 3739.088 kb on + strand at 3739.149 kb on + strand at 3739.179 kb on + strand, within sra at 3739.366 kb on + strand at 3739.366 kb on + strand at 3739.366 kb on + strand at 3739.367 kb on - strand at 3739.482 kb on + strand at 3739.752 kb on + strand, within maeA at 3739.756 kb on + strand, within maeA at 3739.756 kb on + strand, within maeA at 3739.756 kb on + strand, within maeA at 3739.881 kb on + strand, within maeA at 3739.887 kb on + strand, within maeA at 3740.415 kb on - strand, within maeA at 3740.754 kb on + strand, within maeA at 3740.842 kb on - strand, within maeA at 3740.889 kb on + strand, within maeA at 3741.247 kb on + strand at 3741.247 kb on + strand at 3741.277 kb on + strand at 3741.278 kb on - strand at 3741.384 kb on + strand, within adhP at 3741.384 kb on + strand, within adhP at 3741.562 kb on + strand, within adhP at 3741.562 kb on + strand, within adhP at 3741.729 kb on - strand, within adhP at 3742.069 kb on + strand, within adhP
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 3,738,511 - +1.0 3,739,019 + bdm NOLOHH_19025 0.85 -0.4 3,739,075 + +0.6 3,739,088 + +2.6 3,739,149 + -0.7 3,739,179 + sra NOLOHH_19030 0.19 -1.2 3,739,366 + -1.1 3,739,366 + +0.1 3,739,366 + +1.3 3,739,367 - +0.1 3,739,482 + -0.2 3,739,752 + maeA NOLOHH_19035 0.18 -1.3 3,739,756 + maeA NOLOHH_19035 0.18 +1.3 3,739,756 + maeA NOLOHH_19035 0.18 -0.9 3,739,756 + maeA NOLOHH_19035 0.18 +0.0 3,739,881 + maeA NOLOHH_19035 0.26 -0.2 3,739,887 + maeA NOLOHH_19035 0.26 -1.2 3,740,415 - maeA NOLOHH_19035 0.57 +0.2 3,740,754 + maeA NOLOHH_19035 0.77 +0.7 3,740,842 - maeA NOLOHH_19035 0.82 -0.2 3,740,889 + maeA NOLOHH_19035 0.85 -2.0 3,741,247 + +1.8 3,741,247 + -0.0 3,741,277 + +2.6 3,741,278 - +1.0 3,741,384 + adhP NOLOHH_19040 0.10 -1.4 3,741,384 + adhP NOLOHH_19040 0.10 +1.2 3,741,562 + adhP NOLOHH_19040 0.28 +1.4 3,741,562 + adhP NOLOHH_19040 0.28 +1.0 3,741,729 - adhP NOLOHH_19040 0.45 +0.8 3,742,069 + adhP NOLOHH_19040 0.78 -0.8
Or see this region's nucleotide sequence