Strain Fitness in Escherichia coli ECOR27 around NOLOHH_19035

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntosmC and bdm are separated by 345 nucleotidesbdm and sra are separated by 101 nucleotidessra and maeA are separated by 156 nucleotidesmaeA and adhP are separated by 133 nucleotides NOLOHH_19020: osmC - peroxiredoxin OsmC, at 3,738,059 to 3,738,490 osmC NOLOHH_19025: bdm - biofilm-dependent modulation protein, at 3,738,836 to 3,739,051 bdm NOLOHH_19030: sra - stationary-phase-induced ribosome-associated protein, at 3,739,153 to 3,739,290 sra NOLOHH_19035: maeA - malate dehydrogenase, at 3,739,447 to 3,741,144 maeA NOLOHH_19040: adhP - alcohol dehydrogenase AdhP, at 3,741,278 to 3,742,288 adhP Position (kb) 3739 3740 3741 3742Strain fitness (log2 ratio) -2 -1 0 1 2at 3738.511 kb on - strandat 3739.019 kb on + strand, within bdmat 3739.075 kb on + strandat 3739.088 kb on + strandat 3739.149 kb on + strandat 3739.179 kb on + strand, within sraat 3739.366 kb on + strandat 3739.366 kb on + strandat 3739.366 kb on + strandat 3739.367 kb on - strandat 3739.482 kb on + strandat 3739.752 kb on + strand, within maeAat 3739.756 kb on + strand, within maeAat 3739.756 kb on + strand, within maeAat 3739.756 kb on + strand, within maeAat 3739.881 kb on + strand, within maeAat 3739.887 kb on + strand, within maeAat 3740.415 kb on - strand, within maeAat 3740.754 kb on + strand, within maeAat 3740.842 kb on - strand, within maeAat 3740.889 kb on + strand, within maeAat 3741.247 kb on + strandat 3741.247 kb on + strandat 3741.277 kb on + strandat 3741.278 kb on - strandat 3741.384 kb on + strand, within adhPat 3741.384 kb on + strand, within adhPat 3741.562 kb on + strand, within adhPat 3741.562 kb on + strand, within adhPat 3741.729 kb on - strand, within adhPat 3742.069 kb on + strand, within adhP

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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3,738,511 - +1.0
3,739,019 + bdm NOLOHH_19025 0.85 -0.4
3,739,075 + +0.6
3,739,088 + +2.6
3,739,149 + -0.7
3,739,179 + sra NOLOHH_19030 0.19 -1.2
3,739,366 + -1.1
3,739,366 + +0.1
3,739,366 + +1.3
3,739,367 - +0.1
3,739,482 + -0.2
3,739,752 + maeA NOLOHH_19035 0.18 -1.3
3,739,756 + maeA NOLOHH_19035 0.18 +1.3
3,739,756 + maeA NOLOHH_19035 0.18 -0.9
3,739,756 + maeA NOLOHH_19035 0.18 +0.0
3,739,881 + maeA NOLOHH_19035 0.26 -0.2
3,739,887 + maeA NOLOHH_19035 0.26 -1.2
3,740,415 - maeA NOLOHH_19035 0.57 +0.2
3,740,754 + maeA NOLOHH_19035 0.77 +0.7
3,740,842 - maeA NOLOHH_19035 0.82 -0.2
3,740,889 + maeA NOLOHH_19035 0.85 -2.0
3,741,247 + +1.8
3,741,247 + -0.0
3,741,277 + +2.6
3,741,278 - +1.0
3,741,384 + adhP NOLOHH_19040 0.10 -1.4
3,741,384 + adhP NOLOHH_19040 0.10 +1.2
3,741,562 + adhP NOLOHH_19040 0.28 +1.4
3,741,562 + adhP NOLOHH_19040 0.28 +1.0
3,741,729 - adhP NOLOHH_19040 0.45 +0.8
3,742,069 + adhP NOLOHH_19040 0.78 -0.8

Or see this region's nucleotide sequence