Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18130

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntuidA and uidB overlap by 4 nucleotidesuidB and uidC are separated by 38 nucleotides NOLOHH_18125: uidA - beta-glucuronidase, at 3,557,152 to 3,558,963 uidA NOLOHH_18130: uidB - glucuronide transporter, at 3,558,960 to 3,560,333 uidB NOLOHH_18135: uidC - glucuronide uptake porin UidC, at 3,560,372 to 3,561,637 uidC Position (kb) 3558 3559 3560 3561Strain fitness (log2 ratio) -1 0 1 2at 3558.565 kb on + strand, within uidAat 3558.565 kb on + strand, within uidAat 3558.700 kb on + strand, within uidAat 3558.830 kb on + strandat 3559.062 kb on + strandat 3559.247 kb on - strand, within uidBat 3559.285 kb on + strand, within uidBat 3559.286 kb on - strand, within uidBat 3559.286 kb on - strand, within uidBat 3559.290 kb on + strand, within uidBat 3559.652 kb on + strand, within uidBat 3560.582 kb on + strand, within uidCat 3561.118 kb on + strand, within uidCat 3561.146 kb on + strand, within uidCat 3561.243 kb on + strand, within uidCat 3561.243 kb on + strand, within uidC

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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3,558,565 + uidA NOLOHH_18125 0.78 -0.1
3,558,565 + uidA NOLOHH_18125 0.78 +0.4
3,558,700 + uidA NOLOHH_18125 0.85 -1.0
3,558,830 + +2.1
3,559,062 + +0.0
3,559,247 - uidB NOLOHH_18130 0.21 +0.6
3,559,285 + uidB NOLOHH_18130 0.24 -0.4
3,559,286 - uidB NOLOHH_18130 0.24 -0.9
3,559,286 - uidB NOLOHH_18130 0.24 +0.0
3,559,290 + uidB NOLOHH_18130 0.24 -0.9
3,559,652 + uidB NOLOHH_18130 0.50 -0.4
3,560,582 + uidC NOLOHH_18135 0.17 -0.0
3,561,118 + uidC NOLOHH_18135 0.59 -1.1
3,561,146 + uidC NOLOHH_18135 0.61 +0.4
3,561,243 + uidC NOLOHH_18135 0.69 +1.0
3,561,243 + uidC NOLOHH_18135 0.69 +1.1

Or see this region's nucleotide sequence