Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18070

Experiment: K25

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrsxC and rsxB overlap by 8 nucleotidesrsxB and rsxA overlap by 1 nucleotidesrsxA and ydgK are separated by 76 nucleotides NOLOHH_18065: rsxC - electron transport complex subunit RsxC, at 3,544,075 to 3,546,297 rsxC NOLOHH_18070: rsxB - electron transport complex subunit RsxB, at 3,546,290 to 3,546,868 rsxB NOLOHH_18075: rsxA - electron transport complex subunit RsxA, at 3,546,868 to 3,547,449 rsxA NOLOHH_18080: ydgK - Inner membrane protein YdgK, at 3,547,526 to 3,547,966 ydgK Position (kb) 3546 3547Strain fitness (log2 ratio) -3 -2 -1 0 1at 3545.407 kb on + strand, within rsxCat 3545.408 kb on - strand, within rsxCat 3545.408 kb on - strand, within rsxCat 3545.546 kb on - strand, within rsxCat 3545.571 kb on - strand, within rsxCat 3545.809 kb on - strand, within rsxCat 3545.882 kb on - strand, within rsxCat 3545.882 kb on - strand, within rsxCat 3546.414 kb on - strand, within rsxBat 3546.414 kb on - strand, within rsxBat 3546.518 kb on - strand, within rsxBat 3547.219 kb on - strand, within rsxAat 3547.604 kb on - strand, within ydgKat 3547.694 kb on - strand, within ydgK

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K25
remove
3,545,407 + rsxC NOLOHH_18065 0.60 -1.2
3,545,408 - rsxC NOLOHH_18065 0.60 +1.2
3,545,408 - rsxC NOLOHH_18065 0.60 -1.3
3,545,546 - rsxC NOLOHH_18065 0.66 -0.7
3,545,571 - rsxC NOLOHH_18065 0.67 -2.0
3,545,809 - rsxC NOLOHH_18065 0.78 -0.4
3,545,882 - rsxC NOLOHH_18065 0.81 -0.4
3,545,882 - rsxC NOLOHH_18065 0.81 -1.6
3,546,414 - rsxB NOLOHH_18070 0.21 +1.2
3,546,414 - rsxB NOLOHH_18070 0.21 +0.1
3,546,518 - rsxB NOLOHH_18070 0.39 -3.1
3,547,219 - rsxA NOLOHH_18075 0.60 -1.1
3,547,604 - ydgK NOLOHH_18080 0.18 +1.3
3,547,694 - ydgK NOLOHH_18080 0.38 +0.9

Or see this region's nucleotide sequence