Strain Fitness in Escherichia coli ECOR27 around NOLOHH_16335

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliI and fliH overlap by 1 nucleotidesfliH and fliG overlap by 8 nucleotidesfliG and fliF overlap by 8 nucleotides NOLOHH_16330: fliI - flagellum-specific ATP synthase FliI, at 3,215,386 to 3,216,759 fliI NOLOHH_16335: fliH - flagellar assembly protein FliH, at 3,216,759 to 3,217,445 fliH NOLOHH_16340: fliG - flagellar motor switch protein FliG, at 3,217,438 to 3,218,433 fliG NOLOHH_16345: fliF - flagellar M-ring protein FliF, at 3,218,426 to 3,220,084 fliF Position (kb) 3216 3217 3218Strain fitness (log2 ratio) -2 -1 0 1 2at 3215.781 kb on + strand, within fliIat 3215.783 kb on + strand, within fliIat 3215.783 kb on + strand, within fliIat 3216.006 kb on - strand, within fliIat 3216.409 kb on + strand, within fliIat 3216.410 kb on - strand, within fliIat 3216.410 kb on - strand, within fliIat 3216.410 kb on - strand, within fliIat 3216.720 kb on + strandat 3216.761 kb on - strandat 3216.904 kb on - strand, within fliHat 3217.107 kb on - strand, within fliHat 3217.125 kb on - strand, within fliHat 3217.445 kb on + strandat 3217.446 kb on - strandat 3217.446 kb on - strandat 3217.446 kb on - strandat 3217.446 kb on - strandat 3217.468 kb on + strandat 3217.469 kb on - strandat 3217.469 kb on - strandat 3217.900 kb on + strand, within fliGat 3218.146 kb on - strand, within fliGat 3218.278 kb on + strand, within fliGat 3218.279 kb on - strand, within fliGat 3218.445 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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3,215,781 + fliI NOLOHH_16330 0.29 +1.0
3,215,783 + fliI NOLOHH_16330 0.29 -2.4
3,215,783 + fliI NOLOHH_16330 0.29 +0.6
3,216,006 - fliI NOLOHH_16330 0.45 +1.8
3,216,409 + fliI NOLOHH_16330 0.74 +0.5
3,216,410 - fliI NOLOHH_16330 0.75 -0.3
3,216,410 - fliI NOLOHH_16330 0.75 +0.0
3,216,410 - fliI NOLOHH_16330 0.75 +0.0
3,216,720 + -1.4
3,216,761 - -0.2
3,216,904 - fliH NOLOHH_16335 0.21 -1.0
3,217,107 - fliH NOLOHH_16335 0.51 +0.1
3,217,125 - fliH NOLOHH_16335 0.53 -0.8
3,217,445 + -0.6
3,217,446 - -1.0
3,217,446 - -0.0
3,217,446 - +0.1
3,217,446 - +0.2
3,217,468 + -0.6
3,217,469 - -1.6
3,217,469 - -0.6
3,217,900 + fliG NOLOHH_16340 0.46 +0.5
3,218,146 - fliG NOLOHH_16340 0.71 -1.0
3,218,278 + fliG NOLOHH_16340 0.84 -0.1
3,218,279 - fliG NOLOHH_16340 0.84 +0.5
3,218,445 - +0.0

Or see this region's nucleotide sequence