Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14460

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlrhA and NOLOHH_14455 are separated by 203 nucleotidesNOLOHH_14455 and nuoA are separated by 262 nucleotidesnuoA and nuoB are separated by 15 nucleotidesnuoB and nuoC are separated by 93 nucleotides NOLOHH_14450: lrhA - transcriptional regulator LrhA, at 2,815,363 to 2,816,301 lrhA NOLOHH_14455: NOLOHH_14455 - hypothetical protein, at 2,816,505 to 2,816,669 _14455 NOLOHH_14460: nuoA - NADH-quinone oxidoreductase subunit NuoA, at 2,816,932 to 2,817,375 nuoA NOLOHH_14465: nuoB - NADH-quinone oxidoreductase subunit NuoB, at 2,817,391 to 2,818,053 nuoB NOLOHH_14470: nuoC - NADH-quinone oxidoreductase subunit C/D, at 2,818,147 to 2,819,949 nuoC Position (kb) 2816 2817 2818Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2815.932 kb on - strand, within lrhAat 2815.983 kb on + strand, within lrhAat 2815.983 kb on + strand, within lrhAat 2815.992 kb on + strand, within lrhAat 2816.120 kb on + strand, within lrhAat 2816.164 kb on + strand, within lrhAat 2816.164 kb on + strand, within lrhAat 2816.165 kb on - strand, within lrhAat 2816.181 kb on + strand, within lrhAat 2816.203 kb on + strand, within lrhAat 2816.204 kb on - strand, within lrhAat 2816.204 kb on - strand, within lrhAat 2816.221 kb on + strandat 2816.226 kb on + strandat 2816.227 kb on - strandat 2816.239 kb on + strandat 2816.240 kb on - strandat 2816.496 kb on - strandat 2816.620 kb on + strand, within NOLOHH_14455at 2816.671 kb on + strandat 2816.671 kb on + strandat 2816.671 kb on + strandat 2816.671 kb on + strandat 2816.672 kb on - strandat 2816.672 kb on - strandat 2816.810 kb on + strandat 2816.810 kb on + strandat 2816.816 kb on + strandat 2816.817 kb on - strandat 2816.830 kb on + strandat 2816.841 kb on + strandat 2816.926 kb on + strandat 2816.927 kb on - strandat 2816.937 kb on + strandat 2816.937 kb on + strandat 2816.938 kb on - strandat 2816.938 kb on - strandat 2817.116 kb on + strand, within nuoAat 2817.181 kb on + strand, within nuoAat 2817.181 kb on + strand, within nuoAat 2817.182 kb on - strand, within nuoAat 2817.182 kb on - strand, within nuoAat 2817.224 kb on + strand, within nuoAat 2817.354 kb on + strandat 2817.388 kb on - strandat 2817.397 kb on + strandat 2817.397 kb on + strandat 2817.399 kb on + strandat 2817.400 kb on - strandat 2817.400 kb on - strandat 2817.400 kb on - strandat 2817.540 kb on + strand, within nuoBat 2817.561 kb on + strand, within nuoBat 2817.562 kb on - strand, within nuoBat 2817.583 kb on + strand, within nuoBat 2817.584 kb on - strand, within nuoBat 2817.644 kb on + strand, within nuoBat 2817.717 kb on + strand, within nuoBat 2817.730 kb on + strand, within nuoBat 2817.792 kb on + strand, within nuoBat 2817.793 kb on - strand, within nuoBat 2817.796 kb on + strand, within nuoBat 2817.796 kb on + strand, within nuoBat 2817.797 kb on - strand, within nuoBat 2817.797 kb on - strand, within nuoBat 2817.806 kb on - strand, within nuoBat 2817.850 kb on + strand, within nuoBat 2817.850 kb on + strand, within nuoBat 2817.850 kb on + strand, within nuoBat 2817.851 kb on - strand, within nuoBat 2817.851 kb on - strand, within nuoBat 2817.851 kb on - strand, within nuoBat 2817.851 kb on - strand, within nuoBat 2817.851 kb on - strand, within nuoBat 2817.852 kb on + strand, within nuoBat 2817.853 kb on - strand, within nuoBat 2817.883 kb on + strand, within nuoBat 2817.883 kb on + strand, within nuoBat 2817.883 kb on + strand, within nuoBat 2817.884 kb on - strand, within nuoBat 2817.979 kb on - strand, within nuoBat 2818.035 kb on + strandat 2818.035 kb on + strandat 2818.035 kb on + strandat 2818.035 kb on + strandat 2818.158 kb on + strandat 2818.159 kb on - strandat 2818.357 kb on + strand, within nuoCat 2818.357 kb on + strand, within nuoCat 2818.357 kb on + strand, within nuoC

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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2,815,932 - lrhA NOLOHH_14450 0.61 -0.9
2,815,983 + lrhA NOLOHH_14450 0.66 -0.5
2,815,983 + lrhA NOLOHH_14450 0.66 -1.1
2,815,992 + lrhA NOLOHH_14450 0.67 +0.0
2,816,120 + lrhA NOLOHH_14450 0.81 +0.4
2,816,164 + lrhA NOLOHH_14450 0.85 -0.6
2,816,164 + lrhA NOLOHH_14450 0.85 -0.8
2,816,165 - lrhA NOLOHH_14450 0.85 +0.3
2,816,181 + lrhA NOLOHH_14450 0.87 -0.0
2,816,203 + lrhA NOLOHH_14450 0.89 -0.5
2,816,204 - lrhA NOLOHH_14450 0.90 -0.1
2,816,204 - lrhA NOLOHH_14450 0.90 -0.3
2,816,221 + -0.1
2,816,226 + +0.1
2,816,227 - -0.1
2,816,239 + +1.2
2,816,240 - +1.1
2,816,496 - -0.1
2,816,620 + NOLOHH_14455 0.70 +0.2
2,816,671 + -0.8
2,816,671 + +0.2
2,816,671 + +1.0
2,816,671 + -0.4
2,816,672 - -0.3
2,816,672 - -1.1
2,816,810 + +0.1
2,816,810 + -0.5
2,816,816 + -1.6
2,816,817 - -1.6
2,816,830 + -1.3
2,816,841 + +0.1
2,816,926 + -1.5
2,816,927 - -1.0
2,816,937 + +0.4
2,816,937 + -0.8
2,816,938 - -2.7
2,816,938 - +0.3
2,817,116 + nuoA NOLOHH_14460 0.41 -2.0
2,817,181 + nuoA NOLOHH_14460 0.56 -1.0
2,817,181 + nuoA NOLOHH_14460 0.56 +0.1
2,817,182 - nuoA NOLOHH_14460 0.56 +0.1
2,817,182 - nuoA NOLOHH_14460 0.56 -0.6
2,817,224 + nuoA NOLOHH_14460 0.66 -2.6
2,817,354 + +0.2
2,817,388 - -3.0
2,817,397 + +0.1
2,817,397 + +0.3
2,817,399 + +0.0
2,817,400 - -0.3
2,817,400 - +0.1
2,817,400 - +0.8
2,817,540 + nuoB NOLOHH_14465 0.22 -0.9
2,817,561 + nuoB NOLOHH_14465 0.26 -2.3
2,817,562 - nuoB NOLOHH_14465 0.26 -2.3
2,817,583 + nuoB NOLOHH_14465 0.29 -0.8
2,817,584 - nuoB NOLOHH_14465 0.29 -1.4
2,817,644 + nuoB NOLOHH_14465 0.38 -1.4
2,817,717 + nuoB NOLOHH_14465 0.49 -2.5
2,817,730 + nuoB NOLOHH_14465 0.51 -0.3
2,817,792 + nuoB NOLOHH_14465 0.60 +2.7
2,817,793 - nuoB NOLOHH_14465 0.61 -1.7
2,817,796 + nuoB NOLOHH_14465 0.61 +1.3
2,817,796 + nuoB NOLOHH_14465 0.61 -2.4
2,817,797 - nuoB NOLOHH_14465 0.61 -1.2
2,817,797 - nuoB NOLOHH_14465 0.61 +1.4
2,817,806 - nuoB NOLOHH_14465 0.63 -0.2
2,817,850 + nuoB NOLOHH_14465 0.69 -0.9
2,817,850 + nuoB NOLOHH_14465 0.69 -1.0
2,817,850 + nuoB NOLOHH_14465 0.69 -1.6
2,817,851 - nuoB NOLOHH_14465 0.69 +0.8
2,817,851 - nuoB NOLOHH_14465 0.69 +0.3
2,817,851 - nuoB NOLOHH_14465 0.69 +0.8
2,817,851 - nuoB NOLOHH_14465 0.69 -0.5
2,817,851 - nuoB NOLOHH_14465 0.69 -1.0
2,817,852 + nuoB NOLOHH_14465 0.70 -0.8
2,817,853 - nuoB NOLOHH_14465 0.70 +0.8
2,817,883 + nuoB NOLOHH_14465 0.74 -1.5
2,817,883 + nuoB NOLOHH_14465 0.74 -0.6
2,817,883 + nuoB NOLOHH_14465 0.74 +0.6
2,817,884 - nuoB NOLOHH_14465 0.74 -0.9
2,817,979 - nuoB NOLOHH_14465 0.89 -1.3
2,818,035 + -0.6
2,818,035 + -0.6
2,818,035 + -0.2
2,818,035 + -0.4
2,818,158 + +1.2
2,818,159 - -2.7
2,818,357 + nuoC NOLOHH_14470 0.12 -2.5
2,818,357 + nuoC NOLOHH_14470 0.12 +0.1
2,818,357 + nuoC NOLOHH_14470 0.12 +0.1

Or see this region's nucleotide sequence