Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ubiH and ubiI are separated by 22 nucleotides ubiI and yqfI are separated by 73 nucleotides yqfI and gcvT are separated by 289 nucleotides
NOLOHH_11420: ubiH - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 2,207,028 to 2,208,206
ubiH
NOLOHH_11425: ubiI - FAD-dependent 2-octaprenylphenol hydroxylase, at 2,208,229 to 2,209,431
ubiI
NOLOHH_11430: yqfI - Protein YqfI, at 2,209,505 to 2,209,588
yqfI
NOLOHH_11435: gcvT - glycine cleavage system aminomethyltransferase GcvT, at 2,209,878 to 2,210,972
gcvT
Position (kb)
2208
2209
2210 Strain fitness (log2 ratio)
-2
-1
0
1 at 2208.148 kb on + strand at 2208.148 kb on + strand at 2208.223 kb on + strand at 2208.223 kb on + strand at 2208.245 kb on + strand at 2208.245 kb on + strand at 2208.245 kb on + strand at 2208.246 kb on - strand at 2208.460 kb on + strand, within ubiI at 2208.754 kb on - strand, within ubiI at 2208.974 kb on + strand, within ubiI at 2209.004 kb on + strand, within ubiI at 2209.005 kb on - strand, within ubiI at 2209.276 kb on - strand, within ubiI at 2209.384 kb on - strand at 2209.384 kb on - strand at 2209.403 kb on + strand at 2209.403 kb on + strand at 2209.452 kb on - strand at 2209.707 kb on + strand at 2209.900 kb on - strand at 2209.965 kb on + strand at 2209.966 kb on - strand at 2210.030 kb on + strand, within gcvT at 2210.030 kb on + strand, within gcvT at 2210.030 kb on + strand, within gcvT at 2210.030 kb on + strand, within gcvT at 2210.031 kb on - strand, within gcvT at 2210.031 kb on - strand, within gcvT at 2210.031 kb on - strand, within gcvT at 2210.031 kb on - strand, within gcvT at 2210.031 kb on - strand, within gcvT at 2210.031 kb on - strand, within gcvT at 2210.031 kb on - strand, within gcvT at 2210.079 kb on + strand, within gcvT at 2210.130 kb on + strand, within gcvT at 2210.164 kb on + strand, within gcvT at 2210.164 kb on + strand, within gcvT at 2210.164 kb on + strand, within gcvT at 2210.164 kb on + strand, within gcvT at 2210.165 kb on - strand, within gcvT at 2210.165 kb on - strand, within gcvT at 2210.165 kb on - strand, within gcvT at 2210.165 kb on - strand, within gcvT at 2210.182 kb on - strand, within gcvT at 2210.182 kb on - strand, within gcvT at 2210.189 kb on + strand, within gcvT at 2210.190 kb on - strand, within gcvT at 2210.190 kb on - strand, within gcvT at 2210.217 kb on - strand, within gcvT at 2210.285 kb on + strand, within gcvT at 2210.358 kb on - strand, within gcvT
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 2,208,148 + -0.5 2,208,148 + -0.3 2,208,223 + -1.5 2,208,223 + -2.3 2,208,245 + +0.1 2,208,245 + -1.2 2,208,245 + -1.8 2,208,246 - -0.2 2,208,460 + ubiI NOLOHH_11425 0.19 -1.1 2,208,754 - ubiI NOLOHH_11425 0.44 +1.7 2,208,974 + ubiI NOLOHH_11425 0.62 -0.6 2,209,004 + ubiI NOLOHH_11425 0.64 -0.7 2,209,005 - ubiI NOLOHH_11425 0.65 -0.6 2,209,276 - ubiI NOLOHH_11425 0.87 -1.7 2,209,384 - +0.8 2,209,384 - -0.7 2,209,403 + +0.7 2,209,403 + -0.6 2,209,452 - -1.0 2,209,707 + +0.8 2,209,900 - +0.6 2,209,965 + -0.1 2,209,966 - -0.4 2,210,030 + gcvT NOLOHH_11435 0.14 +0.1 2,210,030 + gcvT NOLOHH_11435 0.14 -0.2 2,210,030 + gcvT NOLOHH_11435 0.14 -0.0 2,210,030 + gcvT NOLOHH_11435 0.14 -1.9 2,210,031 - gcvT NOLOHH_11435 0.14 -0.5 2,210,031 - gcvT NOLOHH_11435 0.14 +1.1 2,210,031 - gcvT NOLOHH_11435 0.14 +0.2 2,210,031 - gcvT NOLOHH_11435 0.14 -0.8 2,210,031 - gcvT NOLOHH_11435 0.14 +1.2 2,210,031 - gcvT NOLOHH_11435 0.14 +0.1 2,210,031 - gcvT NOLOHH_11435 0.14 -0.2 2,210,079 + gcvT NOLOHH_11435 0.18 +0.7 2,210,130 + gcvT NOLOHH_11435 0.23 +0.6 2,210,164 + gcvT NOLOHH_11435 0.26 +0.0 2,210,164 + gcvT NOLOHH_11435 0.26 -1.1 2,210,164 + gcvT NOLOHH_11435 0.26 +0.3 2,210,164 + gcvT NOLOHH_11435 0.26 -0.2 2,210,165 - gcvT NOLOHH_11435 0.26 +0.8 2,210,165 - gcvT NOLOHH_11435 0.26 -0.0 2,210,165 - gcvT NOLOHH_11435 0.26 -1.3 2,210,165 - gcvT NOLOHH_11435 0.26 -0.3 2,210,182 - gcvT NOLOHH_11435 0.28 +0.4 2,210,182 - gcvT NOLOHH_11435 0.28 +0.0 2,210,189 + gcvT NOLOHH_11435 0.28 +1.0 2,210,190 - gcvT NOLOHH_11435 0.28 -0.1 2,210,190 - gcvT NOLOHH_11435 0.28 -0.3 2,210,217 - gcvT NOLOHH_11435 0.31 +1.7 2,210,285 + gcvT NOLOHH_11435 0.37 +0.1 2,210,358 - gcvT NOLOHH_11435 0.44 -0.4
Or see this region's nucleotide sequence