Strain Fitness in Escherichia coli ECOR27 around NOLOHH_09695

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyhcC and arcB are separated by 95 nucleotidesarcB and elbB are separated by 229 nucleotideselbB and mtgA overlap by 4 nucleotides NOLOHH_09690: yhcC - TIGR01212 family radical SAM protein, at 1,871,482 to 1,872,411 yhcC NOLOHH_09695: arcB - aerobic respiration two-component sensor histidine kinase ArcB, at 1,872,507 to 1,874,843 arcB NOLOHH_09705: elbB - isoprenoid biosynthesis glyoxalase ElbB, at 1,875,073 to 1,875,726 elbB NOLOHH_09710: mtgA - monofunctional biosynthetic peptidoglycan transglycosylase, at 1,875,723 to 1,876,451 mtgA Position (kb) 1872 1873 1874 1875Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1871.550 kb on + strandat 1871.550 kb on + strandat 1871.551 kb on - strandat 1871.561 kb on + strandat 1871.562 kb on - strandat 1871.584 kb on - strand, within yhcCat 1871.595 kb on + strand, within yhcCat 1871.596 kb on - strand, within yhcCat 1871.625 kb on + strand, within yhcCat 1871.699 kb on + strand, within yhcCat 1871.700 kb on - strand, within yhcCat 1871.700 kb on - strand, within yhcCat 1871.719 kb on + strand, within yhcCat 1871.740 kb on + strand, within yhcCat 1871.742 kb on + strand, within yhcCat 1871.742 kb on + strand, within yhcCat 1871.778 kb on + strand, within yhcCat 1871.778 kb on + strand, within yhcCat 1871.778 kb on + strand, within yhcCat 1871.778 kb on + strand, within yhcCat 1871.778 kb on + strand, within yhcCat 1871.779 kb on - strand, within yhcCat 1871.779 kb on - strand, within yhcCat 1871.779 kb on - strand, within yhcCat 1871.779 kb on - strand, within yhcCat 1871.779 kb on - strand, within yhcCat 1871.779 kb on - strand, within yhcCat 1871.779 kb on - strand, within yhcCat 1871.809 kb on - strand, within yhcCat 1871.809 kb on - strand, within yhcCat 1871.879 kb on - strand, within yhcCat 1871.880 kb on + strand, within yhcCat 1871.880 kb on + strand, within yhcCat 1871.880 kb on + strand, within yhcCat 1871.880 kb on + strand, within yhcCat 1871.881 kb on - strand, within yhcCat 1871.881 kb on - strand, within yhcCat 1871.919 kb on - strand, within yhcCat 1871.985 kb on + strand, within yhcCat 1872.032 kb on + strand, within yhcCat 1872.032 kb on + strand, within yhcCat 1872.033 kb on - strand, within yhcCat 1872.114 kb on - strand, within yhcCat 1872.133 kb on - strand, within yhcCat 1872.133 kb on - strand, within yhcCat 1872.133 kb on - strand, within yhcCat 1872.253 kb on + strand, within yhcCat 1872.253 kb on + strand, within yhcCat 1872.253 kb on + strand, within yhcCat 1872.254 kb on - strand, within yhcCat 1872.346 kb on + strandat 1872.347 kb on - strandat 1872.365 kb on + strandat 1872.366 kb on - strandat 1872.409 kb on + strandat 1872.409 kb on + strandat 1872.447 kb on + strandat 1872.447 kb on + strandat 1872.447 kb on + strandat 1872.448 kb on - strandat 1872.448 kb on - strandat 1872.448 kb on - strandat 1872.450 kb on - strandat 1872.454 kb on + strandat 1872.454 kb on + strandat 1872.454 kb on + strandat 1872.454 kb on + strandat 1872.454 kb on + strandat 1872.454 kb on + strandat 1872.454 kb on + strandat 1872.455 kb on - strandat 1872.534 kb on + strandat 1872.534 kb on + strandat 1872.534 kb on + strandat 1872.534 kb on + strandat 1872.537 kb on + strandat 1872.537 kb on + strandat 1872.537 kb on + strandat 1872.537 kb on + strandat 1872.619 kb on + strandat 1872.671 kb on + strandat 1872.680 kb on + strandat 1872.680 kb on + strandat 1872.837 kb on - strand, within arcBat 1872.840 kb on - strand, within arcBat 1872.851 kb on - strand, within arcBat 1872.976 kb on + strand, within arcBat 1872.976 kb on + strand, within arcBat 1873.029 kb on - strand, within arcBat 1873.188 kb on + strand, within arcBat 1873.188 kb on + strand, within arcBat 1873.254 kb on + strand, within arcBat 1873.364 kb on + strand, within arcBat 1873.365 kb on - strand, within arcBat 1873.391 kb on + strand, within arcBat 1873.518 kb on - strand, within arcBat 1873.532 kb on + strand, within arcBat 1873.533 kb on - strand, within arcBat 1873.731 kb on - strand, within arcBat 1873.866 kb on + strand, within arcBat 1873.866 kb on + strand, within arcBat 1873.866 kb on + strand, within arcBat 1873.866 kb on + strand, within arcBat 1873.866 kb on + strand, within arcBat 1873.866 kb on + strand, within arcBat 1873.867 kb on - strand, within arcBat 1873.967 kb on + strand, within arcBat 1874.459 kb on + strand, within arcBat 1874.460 kb on - strand, within arcBat 1874.483 kb on + strand, within arcBat 1874.483 kb on + strand, within arcBat 1874.536 kb on + strand, within arcBat 1874.657 kb on + strandat 1874.750 kb on + strandat 1874.800 kb on + strandat 1874.870 kb on - strandat 1874.910 kb on + strandat 1874.911 kb on - strandat 1874.911 kb on - strandat 1874.914 kb on - strandat 1874.924 kb on - strandat 1874.977 kb on - strandat 1874.989 kb on - strandat 1875.001 kb on + strandat 1875.001 kb on + strandat 1875.153 kb on - strand, within elbBat 1875.153 kb on - strand, within elbBat 1875.156 kb on + strand, within elbBat 1875.157 kb on - strand, within elbBat 1875.216 kb on + strand, within elbBat 1875.227 kb on + strand, within elbBat 1875.227 kb on + strand, within elbBat 1875.374 kb on + strand, within elbBat 1875.422 kb on + strand, within elbBat 1875.422 kb on + strand, within elbBat 1875.422 kb on + strand, within elbBat 1875.423 kb on - strand, within elbBat 1875.471 kb on + strand, within elbBat 1875.471 kb on + strand, within elbBat 1875.471 kb on + strand, within elbBat 1875.477 kb on + strand, within elbBat 1875.477 kb on + strand, within elbBat 1875.477 kb on + strand, within elbBat 1875.478 kb on - strand, within elbBat 1875.624 kb on + strand, within elbBat 1875.624 kb on + strand, within elbBat 1875.625 kb on - strand, within elbBat 1875.646 kb on + strand, within elbBat 1875.646 kb on + strand, within elbBat 1875.646 kb on + strand, within elbBat 1875.646 kb on + strand, within elbBat 1875.646 kb on + strand, within elbBat 1875.646 kb on + strand, within elbBat 1875.646 kb on + strand, within elbBat 1875.646 kb on + strand, within elbBat 1875.646 kb on + strand, within elbBat 1875.646 kb on + strand, within elbBat 1875.646 kb on + strand, within elbBat 1875.647 kb on - strand, within elbBat 1875.647 kb on - strand, within elbBat 1875.647 kb on - strand, within elbBat 1875.647 kb on - strand, within elbBat 1875.647 kb on - strand, within elbBat 1875.647 kb on - strand, within elbBat 1875.648 kb on + strand, within elbBat 1875.648 kb on + strand, within elbBat 1875.648 kb on + strand, within elbBat 1875.648 kb on + strand, within elbBat 1875.648 kb on + strand, within elbBat 1875.648 kb on + strand, within elbBat 1875.648 kb on + strand, within elbBat 1875.648 kb on + strand, within elbBat 1875.648 kb on + strand, within elbBat 1875.649 kb on - strand, within elbBat 1875.649 kb on - strand, within elbBat 1875.649 kb on - strand, within elbBat 1875.649 kb on - strand, within elbBat 1875.649 kb on - strand, within elbBat 1875.649 kb on - strand, within elbBat 1875.690 kb on + strandat 1875.750 kb on - strandat 1875.824 kb on + strand, within mtgAat 1875.825 kb on - strand, within mtgA

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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1,871,550 + +1.0
1,871,550 + +0.5
1,871,551 - +0.1
1,871,561 + +0.1
1,871,562 - +0.5
1,871,584 - yhcC NOLOHH_09690 0.11 +0.1
1,871,595 + yhcC NOLOHH_09690 0.12 +0.4
1,871,596 - yhcC NOLOHH_09690 0.12 -0.0
1,871,625 + yhcC NOLOHH_09690 0.15 +0.5
1,871,699 + yhcC NOLOHH_09690 0.23 +0.2
1,871,700 - yhcC NOLOHH_09690 0.23 +0.6
1,871,700 - yhcC NOLOHH_09690 0.23 -0.4
1,871,719 + yhcC NOLOHH_09690 0.25 -2.1
1,871,740 + yhcC NOLOHH_09690 0.28 -0.1
1,871,742 + yhcC NOLOHH_09690 0.28 +1.0
1,871,742 + yhcC NOLOHH_09690 0.28 -0.5
1,871,778 + yhcC NOLOHH_09690 0.32 +0.5
1,871,778 + yhcC NOLOHH_09690 0.32 +0.4
1,871,778 + yhcC NOLOHH_09690 0.32 -0.6
1,871,778 + yhcC NOLOHH_09690 0.32 +0.6
1,871,778 + yhcC NOLOHH_09690 0.32 +0.2
1,871,779 - yhcC NOLOHH_09690 0.32 -0.5
1,871,779 - yhcC NOLOHH_09690 0.32 +0.1
1,871,779 - yhcC NOLOHH_09690 0.32 -0.3
1,871,779 - yhcC NOLOHH_09690 0.32 +0.1
1,871,779 - yhcC NOLOHH_09690 0.32 +0.2
1,871,779 - yhcC NOLOHH_09690 0.32 -0.1
1,871,779 - yhcC NOLOHH_09690 0.32 -0.3
1,871,809 - yhcC NOLOHH_09690 0.35 +0.8
1,871,809 - yhcC NOLOHH_09690 0.35 +0.5
1,871,879 - yhcC NOLOHH_09690 0.43 -0.4
1,871,880 + yhcC NOLOHH_09690 0.43 +0.4
1,871,880 + yhcC NOLOHH_09690 0.43 +0.2
1,871,880 + yhcC NOLOHH_09690 0.43 -0.2
1,871,880 + yhcC NOLOHH_09690 0.43 +0.4
1,871,881 - yhcC NOLOHH_09690 0.43 +0.7
1,871,881 - yhcC NOLOHH_09690 0.43 +0.3
1,871,919 - yhcC NOLOHH_09690 0.47 -1.2
1,871,985 + yhcC NOLOHH_09690 0.54 +1.1
1,872,032 + yhcC NOLOHH_09690 0.59 -0.2
1,872,032 + yhcC NOLOHH_09690 0.59 -0.7
1,872,033 - yhcC NOLOHH_09690 0.59 +0.8
1,872,114 - yhcC NOLOHH_09690 0.68 +0.2
1,872,133 - yhcC NOLOHH_09690 0.70 -1.3
1,872,133 - yhcC NOLOHH_09690 0.70 -1.1
1,872,133 - yhcC NOLOHH_09690 0.70 +0.6
1,872,253 + yhcC NOLOHH_09690 0.83 -0.9
1,872,253 + yhcC NOLOHH_09690 0.83 -0.2
1,872,253 + yhcC NOLOHH_09690 0.83 +0.7
1,872,254 - yhcC NOLOHH_09690 0.83 +0.4
1,872,346 + -1.5
1,872,347 - +0.3
1,872,365 + -0.3
1,872,366 - +0.3
1,872,409 + -1.2
1,872,409 + +0.3
1,872,447 + -0.1
1,872,447 + -0.2
1,872,447 + +0.3
1,872,448 - +0.7
1,872,448 - +0.7
1,872,448 - -0.4
1,872,450 - -0.5
1,872,454 + -0.9
1,872,454 + +0.0
1,872,454 + -0.1
1,872,454 + -1.0
1,872,454 + +1.8
1,872,454 + +0.2
1,872,454 + -0.1
1,872,455 - +0.4
1,872,534 + -1.7
1,872,534 + -0.5
1,872,534 + -0.2
1,872,534 + -0.9
1,872,537 + -0.8
1,872,537 + -0.1
1,872,537 + +4.1
1,872,537 + +1.0
1,872,619 + -0.7
1,872,671 + -0.5
1,872,680 + -2.0
1,872,680 + -2.6
1,872,837 - arcB NOLOHH_09695 0.14 -1.2
1,872,840 - arcB NOLOHH_09695 0.14 -0.1
1,872,851 - arcB NOLOHH_09695 0.15 +0.2
1,872,976 + arcB NOLOHH_09695 0.20 +2.4
1,872,976 + arcB NOLOHH_09695 0.20 +0.2
1,873,029 - arcB NOLOHH_09695 0.22 -1.2
1,873,188 + arcB NOLOHH_09695 0.29 -1.3
1,873,188 + arcB NOLOHH_09695 0.29 +0.3
1,873,254 + arcB NOLOHH_09695 0.32 -1.0
1,873,364 + arcB NOLOHH_09695 0.37 -1.5
1,873,365 - arcB NOLOHH_09695 0.37 -0.7
1,873,391 + arcB NOLOHH_09695 0.38 -2.4
1,873,518 - arcB NOLOHH_09695 0.43 -1.1
1,873,532 + arcB NOLOHH_09695 0.44 -0.2
1,873,533 - arcB NOLOHH_09695 0.44 -0.5
1,873,731 - arcB NOLOHH_09695 0.52 -1.2
1,873,866 + arcB NOLOHH_09695 0.58 +0.2
1,873,866 + arcB NOLOHH_09695 0.58 -0.3
1,873,866 + arcB NOLOHH_09695 0.58 -0.4
1,873,866 + arcB NOLOHH_09695 0.58 -0.2
1,873,866 + arcB NOLOHH_09695 0.58 -0.2
1,873,866 + arcB NOLOHH_09695 0.58 -1.5
1,873,867 - arcB NOLOHH_09695 0.58 -1.1
1,873,967 + arcB NOLOHH_09695 0.62 -3.1
1,874,459 + arcB NOLOHH_09695 0.84 +0.5
1,874,460 - arcB NOLOHH_09695 0.84 -0.8
1,874,483 + arcB NOLOHH_09695 0.85 -2.0
1,874,483 + arcB NOLOHH_09695 0.85 -0.2
1,874,536 + arcB NOLOHH_09695 0.87 -0.8
1,874,657 + -1.4
1,874,750 + -0.8
1,874,800 + +1.0
1,874,870 - -0.7
1,874,910 + +0.5
1,874,911 - -0.3
1,874,911 - +1.1
1,874,914 - -0.2
1,874,924 - -0.2
1,874,977 - -0.3
1,874,989 - +0.3
1,875,001 + +0.1
1,875,001 + -0.5
1,875,153 - elbB NOLOHH_09705 0.12 -0.0
1,875,153 - elbB NOLOHH_09705 0.12 +0.2
1,875,156 + elbB NOLOHH_09705 0.13 +0.4
1,875,157 - elbB NOLOHH_09705 0.13 -0.3
1,875,216 + elbB NOLOHH_09705 0.22 -0.2
1,875,227 + elbB NOLOHH_09705 0.24 +1.0
1,875,227 + elbB NOLOHH_09705 0.24 +0.4
1,875,374 + elbB NOLOHH_09705 0.46 +0.6
1,875,422 + elbB NOLOHH_09705 0.53 +0.4
1,875,422 + elbB NOLOHH_09705 0.53 +0.1
1,875,422 + elbB NOLOHH_09705 0.53 -0.2
1,875,423 - elbB NOLOHH_09705 0.54 -0.2
1,875,471 + elbB NOLOHH_09705 0.61 -0.4
1,875,471 + elbB NOLOHH_09705 0.61 -0.4
1,875,471 + elbB NOLOHH_09705 0.61 -0.7
1,875,477 + elbB NOLOHH_09705 0.62 +0.5
1,875,477 + elbB NOLOHH_09705 0.62 +0.6
1,875,477 + elbB NOLOHH_09705 0.62 +1.0
1,875,478 - elbB NOLOHH_09705 0.62 -0.7
1,875,624 + elbB NOLOHH_09705 0.84 -0.5
1,875,624 + elbB NOLOHH_09705 0.84 -0.3
1,875,625 - elbB NOLOHH_09705 0.84 -0.7
1,875,646 + elbB NOLOHH_09705 0.88 +0.1
1,875,646 + elbB NOLOHH_09705 0.88 -0.9
1,875,646 + elbB NOLOHH_09705 0.88 +0.2
1,875,646 + elbB NOLOHH_09705 0.88 -0.9
1,875,646 + elbB NOLOHH_09705 0.88 -0.1
1,875,646 + elbB NOLOHH_09705 0.88 -1.7
1,875,646 + elbB NOLOHH_09705 0.88 -0.5
1,875,646 + elbB NOLOHH_09705 0.88 -0.8
1,875,646 + elbB NOLOHH_09705 0.88 +0.0
1,875,646 + elbB NOLOHH_09705 0.88 -0.4
1,875,646 + elbB NOLOHH_09705 0.88 +0.4
1,875,647 - elbB NOLOHH_09705 0.88 -1.5
1,875,647 - elbB NOLOHH_09705 0.88 -0.4
1,875,647 - elbB NOLOHH_09705 0.88 +0.2
1,875,647 - elbB NOLOHH_09705 0.88 +0.6
1,875,647 - elbB NOLOHH_09705 0.88 +1.2
1,875,647 - elbB NOLOHH_09705 0.88 -0.0
1,875,648 + elbB NOLOHH_09705 0.88 +1.2
1,875,648 + elbB NOLOHH_09705 0.88 +0.6
1,875,648 + elbB NOLOHH_09705 0.88 -0.0
1,875,648 + elbB NOLOHH_09705 0.88 -1.1
1,875,648 + elbB NOLOHH_09705 0.88 +0.4
1,875,648 + elbB NOLOHH_09705 0.88 -0.9
1,875,648 + elbB NOLOHH_09705 0.88 +0.0
1,875,648 + elbB NOLOHH_09705 0.88 +0.4
1,875,648 + elbB NOLOHH_09705 0.88 +0.1
1,875,649 - elbB NOLOHH_09705 0.88 -0.1
1,875,649 - elbB NOLOHH_09705 0.88 +0.8
1,875,649 - elbB NOLOHH_09705 0.88 -0.2
1,875,649 - elbB NOLOHH_09705 0.88 +0.4
1,875,649 - elbB NOLOHH_09705 0.88 -0.8
1,875,649 - elbB NOLOHH_09705 0.88 +0.6
1,875,690 + -0.3
1,875,750 - -0.4
1,875,824 + mtgA NOLOHH_09710 0.14 +0.0
1,875,825 - mtgA NOLOHH_09710 0.14 -0.5

Or see this region's nucleotide sequence