Strain Fitness in Escherichia coli ECOR27 around NOLOHH_08605

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntggt and yrhB are separated by 37 nucleotidesyrhB and yrhD are separated by 199 nucleotidesyrhD and yrhA are separated by 94 nucleotidesyrhA and yhhZ overlap by 4 nucleotides NOLOHH_08590: ggt - gamma-glutamyltransferase, at 1,660,421 to 1,662,163 ggt NOLOHH_08595: yrhB - Uncharacterized protein YrhB, at 1,662,201 to 1,662,485 yrhB NOLOHH_08600: yrhD - Protein YrhD, at 1,662,685 to 1,662,840 yrhD NOLOHH_08605: yrhA - protein YrhA, at 1,662,935 to 1,663,429 yrhA NOLOHH_08610: yhhZ - Uncharacterized protein YhhZ, at 1,663,426 to 1,664,604 yhhZ Position (kb) 1662 1663 1664Strain fitness (log2 ratio) -1 0 1at 1662.088 kb on + strandat 1662.089 kb on - strandat 1662.113 kb on + strandat 1662.113 kb on + strandat 1662.113 kb on + strandat 1662.158 kb on + strandat 1662.194 kb on + strandat 1662.195 kb on - strandat 1662.195 kb on - strandat 1662.218 kb on + strandat 1662.228 kb on + strandat 1662.248 kb on - strand, within yrhBat 1662.308 kb on + strand, within yrhBat 1662.382 kb on + strand, within yrhBat 1662.382 kb on + strand, within yrhBat 1662.383 kb on - strand, within yrhBat 1662.408 kb on + strand, within yrhBat 1662.414 kb on - strand, within yrhBat 1662.489 kb on + strandat 1662.687 kb on - strandat 1662.784 kb on + strand, within yrhDat 1662.784 kb on + strand, within yrhDat 1662.785 kb on - strand, within yrhDat 1662.785 kb on - strand, within yrhDat 1662.818 kb on - strand, within yrhDat 1662.841 kb on - strandat 1663.280 kb on - strand, within yrhAat 1663.443 kb on + strandat 1663.557 kb on + strand, within yhhZat 1663.562 kb on + strand, within yhhZat 1663.605 kb on + strand, within yhhZat 1663.811 kb on - strand, within yhhZat 1663.869 kb on - strand, within yhhZat 1663.887 kb on - strand, within yhhZat 1663.974 kb on - strand, within yhhZat 1663.981 kb on + strand, within yhhZat 1664.059 kb on + strand, within yhhZat 1664.060 kb on - strand, within yhhZat 1664.141 kb on + strand, within yhhZat 1664.163 kb on - strand, within yhhZat 1664.301 kb on - strand, within yhhZat 1664.304 kb on - strand, within yhhZ

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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1,662,088 + +0.3
1,662,089 - -0.4
1,662,113 + -0.1
1,662,113 + -0.3
1,662,113 + -0.1
1,662,158 + +0.1
1,662,194 + +0.1
1,662,195 - +0.1
1,662,195 - -0.4
1,662,218 + +0.2
1,662,228 + +0.5
1,662,248 - yrhB NOLOHH_08595 0.16 -0.1
1,662,308 + yrhB NOLOHH_08595 0.38 +0.2
1,662,382 + yrhB NOLOHH_08595 0.64 +0.2
1,662,382 + yrhB NOLOHH_08595 0.64 -0.3
1,662,383 - yrhB NOLOHH_08595 0.64 +0.3
1,662,408 + yrhB NOLOHH_08595 0.73 -1.1
1,662,414 - yrhB NOLOHH_08595 0.75 +0.2
1,662,489 + -0.7
1,662,687 - -0.5
1,662,784 + yrhD NOLOHH_08600 0.63 +0.6
1,662,784 + yrhD NOLOHH_08600 0.63 -0.4
1,662,785 - yrhD NOLOHH_08600 0.64 +0.2
1,662,785 - yrhD NOLOHH_08600 0.64 +0.0
1,662,818 - yrhD NOLOHH_08600 0.85 +0.3
1,662,841 - -1.3
1,663,280 - yrhA NOLOHH_08605 0.70 -0.9
1,663,443 + +0.0
1,663,557 + yhhZ NOLOHH_08610 0.11 -0.3
1,663,562 + yhhZ NOLOHH_08610 0.12 -0.2
1,663,605 + yhhZ NOLOHH_08610 0.15 -0.5
1,663,811 - yhhZ NOLOHH_08610 0.33 +0.7
1,663,869 - yhhZ NOLOHH_08610 0.38 +0.1
1,663,887 - yhhZ NOLOHH_08610 0.39 +0.5
1,663,974 - yhhZ NOLOHH_08610 0.46 -0.6
1,663,981 + yhhZ NOLOHH_08610 0.47 -0.1
1,664,059 + yhhZ NOLOHH_08610 0.54 -0.6
1,664,060 - yhhZ NOLOHH_08610 0.54 +0.3
1,664,141 + yhhZ NOLOHH_08610 0.61 +0.4
1,664,163 - yhhZ NOLOHH_08610 0.63 -0.5
1,664,301 - yhhZ NOLOHH_08610 0.74 -0.5
1,664,304 - yhhZ NOLOHH_08610 0.74 +1.2

Or see this region's nucleotide sequence