Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ggt and yrhB are separated by 37 nucleotides yrhB and yrhD are separated by 199 nucleotides yrhD and yrhA are separated by 94 nucleotides yrhA and yhhZ overlap by 4 nucleotides
NOLOHH_08590: ggt - gamma-glutamyltransferase, at 1,660,421 to 1,662,163
ggt
NOLOHH_08595: yrhB - Uncharacterized protein YrhB, at 1,662,201 to 1,662,485
yrhB
NOLOHH_08600: yrhD - Protein YrhD, at 1,662,685 to 1,662,840
yrhD
NOLOHH_08605: yrhA - protein YrhA, at 1,662,935 to 1,663,429
yrhA
NOLOHH_08610: yhhZ - Uncharacterized protein YhhZ, at 1,663,426 to 1,664,604
yhhZ
Position (kb)
1662
1663
1664 Strain fitness (log2 ratio)
-1
0
1 at 1662.088 kb on + strand at 1662.089 kb on - strand at 1662.113 kb on + strand at 1662.113 kb on + strand at 1662.113 kb on + strand at 1662.158 kb on + strand at 1662.194 kb on + strand at 1662.195 kb on - strand at 1662.195 kb on - strand at 1662.218 kb on + strand at 1662.228 kb on + strand at 1662.248 kb on - strand, within yrhB at 1662.308 kb on + strand, within yrhB at 1662.382 kb on + strand, within yrhB at 1662.382 kb on + strand, within yrhB at 1662.383 kb on - strand, within yrhB at 1662.408 kb on + strand, within yrhB at 1662.414 kb on - strand, within yrhB at 1662.489 kb on + strand at 1662.687 kb on - strand at 1662.784 kb on + strand, within yrhD at 1662.784 kb on + strand, within yrhD at 1662.785 kb on - strand, within yrhD at 1662.785 kb on - strand, within yrhD at 1662.818 kb on - strand, within yrhD at 1662.841 kb on - strand at 1663.280 kb on - strand, within yrhA at 1663.443 kb on + strand at 1663.557 kb on + strand, within yhhZ at 1663.562 kb on + strand, within yhhZ at 1663.605 kb on + strand, within yhhZ at 1663.811 kb on - strand, within yhhZ at 1663.869 kb on - strand, within yhhZ at 1663.887 kb on - strand, within yhhZ at 1663.974 kb on - strand, within yhhZ at 1663.981 kb on + strand, within yhhZ at 1664.059 kb on + strand, within yhhZ at 1664.060 kb on - strand, within yhhZ at 1664.141 kb on + strand, within yhhZ at 1664.163 kb on - strand, within yhhZ at 1664.301 kb on - strand, within yhhZ at 1664.304 kb on - strand, within yhhZ
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 1,662,088 + +0.3 1,662,089 - -0.4 1,662,113 + -0.1 1,662,113 + -0.3 1,662,113 + -0.1 1,662,158 + +0.1 1,662,194 + +0.1 1,662,195 - +0.1 1,662,195 - -0.4 1,662,218 + +0.2 1,662,228 + +0.5 1,662,248 - yrhB NOLOHH_08595 0.16 -0.1 1,662,308 + yrhB NOLOHH_08595 0.38 +0.2 1,662,382 + yrhB NOLOHH_08595 0.64 +0.2 1,662,382 + yrhB NOLOHH_08595 0.64 -0.3 1,662,383 - yrhB NOLOHH_08595 0.64 +0.3 1,662,408 + yrhB NOLOHH_08595 0.73 -1.1 1,662,414 - yrhB NOLOHH_08595 0.75 +0.2 1,662,489 + -0.7 1,662,687 - -0.5 1,662,784 + yrhD NOLOHH_08600 0.63 +0.6 1,662,784 + yrhD NOLOHH_08600 0.63 -0.4 1,662,785 - yrhD NOLOHH_08600 0.64 +0.2 1,662,785 - yrhD NOLOHH_08600 0.64 +0.0 1,662,818 - yrhD NOLOHH_08600 0.85 +0.3 1,662,841 - -1.3 1,663,280 - yrhA NOLOHH_08605 0.70 -0.9 1,663,443 + +0.0 1,663,557 + yhhZ NOLOHH_08610 0.11 -0.3 1,663,562 + yhhZ NOLOHH_08610 0.12 -0.2 1,663,605 + yhhZ NOLOHH_08610 0.15 -0.5 1,663,811 - yhhZ NOLOHH_08610 0.33 +0.7 1,663,869 - yhhZ NOLOHH_08610 0.38 +0.1 1,663,887 - yhhZ NOLOHH_08610 0.39 +0.5 1,663,974 - yhhZ NOLOHH_08610 0.46 -0.6 1,663,981 + yhhZ NOLOHH_08610 0.47 -0.1 1,664,059 + yhhZ NOLOHH_08610 0.54 -0.6 1,664,060 - yhhZ NOLOHH_08610 0.54 +0.3 1,664,141 + yhhZ NOLOHH_08610 0.61 +0.4 1,664,163 - yhhZ NOLOHH_08610 0.63 -0.5 1,664,301 - yhhZ NOLOHH_08610 0.74 -0.5 1,664,304 - yhhZ NOLOHH_08610 0.74 +1.2
Or see this region's nucleotide sequence