Strain Fitness in Escherichia coli ECOR27 around NOLOHH_06520

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_06510 and NOLOHH_06515 are separated by 861 nucleotidesNOLOHH_06515 and NOLOHH_06520 overlap by 8 nucleotidesNOLOHH_06520 and NOLOHH_06525 overlap by 4 nucleotidesNOLOHH_06525 and corA are separated by 53 nucleotides NOLOHH_06510: NOLOHH_06510 - Membrane protein, at 1,227,467 to 1,227,766 _06510 NOLOHH_06515: NOLOHH_06515 - hypothetical protein, at 1,228,628 to 1,228,735 _06515 NOLOHH_06520: NOLOHH_06520 - DUF3289 domain-containing protein, at 1,228,728 to 1,229,576 _06520 NOLOHH_06525: NOLOHH_06525 - DUF943 domain-containing protein, at 1,229,573 to 1,230,052 _06525 NOLOHH_06530: corA - magnesium/cobalt transporter CorA, at 1,230,106 to 1,231,056 corA Position (kb) 1228 1229 1230Strain fitness (log2 ratio) -2 -1 0 1at 1228.144 kb on - strandat 1228.280 kb on - strandat 1228.322 kb on + strandat 1228.323 kb on - strandat 1228.324 kb on + strandat 1228.369 kb on - strandat 1228.373 kb on + strandat 1228.393 kb on - strandat 1228.397 kb on - strandat 1228.397 kb on - strandat 1228.426 kb on + strandat 1228.427 kb on - strandat 1228.451 kb on + strandat 1228.500 kb on - strandat 1228.538 kb on + strandat 1229.057 kb on + strand, within NOLOHH_06520at 1229.264 kb on - strand, within NOLOHH_06520at 1229.601 kb on + strandat 1229.602 kb on - strandat 1229.628 kb on - strand, within NOLOHH_06525at 1229.804 kb on - strand, within NOLOHH_06525at 1229.811 kb on - strand, within NOLOHH_06525at 1230.104 kb on + strandat 1230.138 kb on - strandat 1230.169 kb on - strandat 1230.263 kb on - strand, within corAat 1230.391 kb on - strand, within corAat 1230.545 kb on + strand, within corAat 1230.546 kb on - strand, within corAat 1230.571 kb on - strand, within corAat 1230.571 kb on - strand, within corAat 1230.571 kb on - strand, within corAat 1230.575 kb on - strand, within corA

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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1,228,144 - +0.7
1,228,280 - -0.5
1,228,322 + -0.9
1,228,323 - -0.8
1,228,324 + +0.6
1,228,369 - -0.3
1,228,373 + +0.4
1,228,393 - +0.9
1,228,397 - -0.4
1,228,397 - +0.4
1,228,426 + +0.2
1,228,427 - -1.2
1,228,451 + +0.3
1,228,500 - +0.2
1,228,538 + -0.2
1,229,057 + NOLOHH_06520 0.39 -0.6
1,229,264 - NOLOHH_06520 0.63 -1.8
1,229,601 + -1.0
1,229,602 - -1.0
1,229,628 - NOLOHH_06525 0.11 +0.7
1,229,804 - NOLOHH_06525 0.48 +0.5
1,229,811 - NOLOHH_06525 0.50 -2.5
1,230,104 + -0.4
1,230,138 - -1.4
1,230,169 - -1.9
1,230,263 - corA NOLOHH_06530 0.17 -0.9
1,230,391 - corA NOLOHH_06530 0.30 -0.1
1,230,545 + corA NOLOHH_06530 0.46 +0.9
1,230,546 - corA NOLOHH_06530 0.46 -0.1
1,230,571 - corA NOLOHH_06530 0.49 -1.1
1,230,571 - corA NOLOHH_06530 0.49 -1.8
1,230,571 - corA NOLOHH_06530 0.49 -1.8
1,230,575 - corA NOLOHH_06530 0.49 -0.9

Or see this region's nucleotide sequence