Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjbF and yjbE are separated by 113 nucleotides yjbE and pgi are separated by 354 nucleotides pgi and lysC are separated by 524 nucleotides
NOLOHH_05320: yjbF - Uncharacterized lipoprotein YjbF, at 981,615 to 982,253
yjbF
NOLOHH_05325: yjbE - Uncharacterized protein YjbE, at 982,367 to 982,609
yjbE
NOLOHH_05335: pgi - glucose-6-phosphate isomerase, at 982,964 to 984,613
pgi
NOLOHH_05340: lysC - lysine-sensitive aspartokinase 3, at 985,138 to 986,487
lysC
Position (kb) 982
983
984
985 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 982.086 kb on - strand, within yjbF at 982.096 kb on + strand, within yjbF at 982.096 kb on + strand, within yjbF at 982.096 kb on + strand, within yjbF at 982.097 kb on - strand, within yjbF at 982.116 kb on - strand, within yjbF at 982.125 kb on - strand, within yjbF at 982.215 kb on + strand at 982.215 kb on + strand at 982.215 kb on + strand at 982.219 kb on - strand at 982.229 kb on + strand at 982.229 kb on + strand at 982.229 kb on + strand at 982.229 kb on + strand at 982.302 kb on + strand at 982.302 kb on + strand at 982.302 kb on + strand at 982.303 kb on - strand at 982.303 kb on - strand at 982.314 kb on + strand at 982.314 kb on + strand at 982.314 kb on + strand at 982.314 kb on + strand at 982.314 kb on + strand at 982.315 kb on - strand at 982.315 kb on - strand at 982.315 kb on - strand at 982.356 kb on + strand at 982.356 kb on + strand at 982.357 kb on - strand at 982.357 kb on - strand at 982.360 kb on + strand at 982.360 kb on + strand at 982.360 kb on + strand at 982.360 kb on + strand at 982.360 kb on + strand at 982.360 kb on + strand at 982.360 kb on + strand at 982.360 kb on + strand at 982.360 kb on + strand at 982.360 kb on + strand at 982.360 kb on + strand at 982.360 kb on + strand at 982.361 kb on - strand at 982.361 kb on - strand at 982.361 kb on - strand at 982.361 kb on - strand at 982.361 kb on - strand at 982.361 kb on - strand at 982.361 kb on - strand at 982.361 kb on - strand at 982.361 kb on - strand at 982.361 kb on - strand at 982.361 kb on - strand at 982.365 kb on + strand at 982.365 kb on + strand at 982.365 kb on + strand at 982.366 kb on - strand at 982.366 kb on - strand at 982.366 kb on - strand at 982.366 kb on - strand at 982.368 kb on + strand at 982.408 kb on + strand, within yjbE at 982.409 kb on - strand, within yjbE at 982.460 kb on + strand, within yjbE at 982.538 kb on + strand, within yjbE at 982.538 kb on + strand, within yjbE at 982.539 kb on - strand, within yjbE at 982.539 kb on - strand, within yjbE at 982.749 kb on + strand at 982.763 kb on + strand at 982.763 kb on + strand at 982.933 kb on + strand at 983.012 kb on - strand at 983.148 kb on + strand, within pgi at 983.248 kb on - strand, within pgi at 983.248 kb on - strand, within pgi at 983.269 kb on + strand, within pgi at 983.348 kb on - strand, within pgi at 983.418 kb on - strand, within pgi at 983.488 kb on + strand, within pgi at 983.535 kb on + strand, within pgi at 983.535 kb on + strand, within pgi at 983.535 kb on + strand, within pgi at 983.535 kb on + strand, within pgi at 983.535 kb on + strand, within pgi at 983.535 kb on + strand, within pgi at 983.536 kb on - strand, within pgi at 983.536 kb on - strand, within pgi at 983.536 kb on - strand, within pgi at 983.536 kb on - strand, within pgi at 983.536 kb on - strand, within pgi at 983.536 kb on - strand, within pgi at 983.536 kb on - strand, within pgi at 983.536 kb on - strand, within pgi at 983.539 kb on + strand, within pgi at 983.571 kb on + strand, within pgi at 983.572 kb on - strand, within pgi at 983.590 kb on + strand, within pgi at 983.590 kb on + strand, within pgi at 983.590 kb on + strand, within pgi at 983.590 kb on + strand, within pgi at 983.590 kb on + strand, within pgi at 983.590 kb on + strand, within pgi at 983.590 kb on + strand, within pgi at 983.590 kb on + strand, within pgi at 983.591 kb on - strand, within pgi at 983.591 kb on - strand, within pgi at 983.591 kb on - strand, within pgi at 983.591 kb on - strand, within pgi at 983.591 kb on - strand, within pgi at 983.591 kb on - strand, within pgi at 983.591 kb on - strand, within pgi at 983.591 kb on - strand, within pgi at 983.591 kb on - strand, within pgi at 983.591 kb on - strand, within pgi at 983.591 kb on - strand, within pgi at 983.591 kb on - strand, within pgi at 983.592 kb on + strand, within pgi at 983.593 kb on - strand, within pgi at 983.593 kb on - strand, within pgi at 983.593 kb on - strand, within pgi at 983.644 kb on - strand, within pgi at 983.644 kb on - strand, within pgi at 983.749 kb on + strand, within pgi at 983.750 kb on - strand, within pgi at 983.968 kb on + strand, within pgi at 983.969 kb on - strand, within pgi at 983.969 kb on - strand, within pgi at 983.992 kb on + strand, within pgi at 984.126 kb on + strand, within pgi at 984.127 kb on - strand, within pgi at 984.127 kb on - strand, within pgi at 984.165 kb on - strand, within pgi at 984.190 kb on - strand, within pgi at 984.211 kb on + strand, within pgi at 984.266 kb on + strand, within pgi at 984.266 kb on + strand, within pgi at 984.266 kb on + strand, within pgi at 984.267 kb on - strand, within pgi at 984.267 kb on - strand, within pgi at 984.267 kb on - strand, within pgi at 984.376 kb on + strand, within pgi at 984.376 kb on + strand, within pgi at 984.496 kb on + strand at 984.570 kb on - strand at 984.614 kb on + strand at 984.620 kb on + strand at 984.690 kb on + strand at 984.691 kb on - strand at 984.705 kb on - strand at 984.716 kb on + strand at 984.741 kb on + strand at 984.741 kb on + strand at 984.742 kb on - strand at 984.744 kb on + strand at 984.753 kb on + strand at 984.753 kb on + strand at 984.753 kb on + strand at 984.754 kb on - strand at 984.821 kb on + strand at 984.822 kb on - strand at 984.825 kb on + strand at 984.827 kb on + strand at 984.828 kb on - strand at 984.828 kb on - strand at 984.828 kb on - strand at 984.833 kb on + strand at 984.833 kb on + strand at 984.833 kb on + strand at 984.833 kb on + strand at 984.833 kb on + strand at 984.833 kb on + strand at 984.834 kb on - strand at 984.834 kb on - strand at 984.834 kb on - strand at 984.834 kb on - strand at 984.834 kb on - strand at 984.906 kb on + strand at 984.967 kb on - strand at 985.050 kb on + strand at 985.051 kb on - strand at 985.054 kb on - strand at 985.061 kb on + strand at 985.133 kb on + strand at 985.134 kb on - strand at 985.134 kb on - strand at 985.137 kb on + strand at 985.137 kb on + strand at 985.137 kb on + strand at 985.137 kb on + strand at 985.138 kb on - strand at 985.138 kb on - strand at 985.138 kb on - strand at 985.138 kb on - strand at 985.138 kb on - strand at 985.138 kb on - strand at 985.178 kb on + strand at 985.178 kb on + strand at 985.178 kb on + strand at 985.178 kb on + strand at 985.178 kb on + strand at 985.178 kb on + strand at 985.212 kb on + strand at 985.213 kb on - strand at 985.241 kb on + strand at 985.241 kb on + strand at 985.242 kb on - strand at 985.242 kb on - strand at 985.242 kb on - strand at 985.244 kb on + strand at 985.266 kb on + strand at 985.267 kb on - strand at 985.272 kb on + strand at 985.422 kb on + strand, within lysC at 985.423 kb on - strand, within lysC at 985.562 kb on + strand, within lysC at 985.562 kb on + strand, within lysC at 985.562 kb on + strand, within lysC at 985.562 kb on + strand, within lysC at 985.563 kb on - strand, within lysC at 985.563 kb on - strand, within lysC at 985.566 kb on + strand, within lysC at 985.566 kb on + strand, within lysC at 985.567 kb on - strand, within lysC at 985.567 kb on - strand, within lysC at 985.567 kb on - strand, within lysC at 985.578 kb on + strand, within lysC at 985.578 kb on + strand, within lysC at 985.613 kb on + strand, within lysC at 985.613 kb on + strand, within lysC
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 982,086 - yjbF NOLOHH_05320 0.74 +0.4 982,096 + yjbF NOLOHH_05320 0.75 +0.8 982,096 + yjbF NOLOHH_05320 0.75 -0.4 982,096 + yjbF NOLOHH_05320 0.75 +1.6 982,097 - yjbF NOLOHH_05320 0.75 +0.1 982,116 - yjbF NOLOHH_05320 0.78 -0.0 982,125 - yjbF NOLOHH_05320 0.80 +1.0 982,215 + -0.5 982,215 + +0.3 982,215 + -0.6 982,219 - -0.0 982,229 + -0.1 982,229 + -0.3 982,229 + +0.3 982,229 + -1.1 982,302 + +0.3 982,302 + +0.3 982,302 + -0.3 982,303 - -0.6 982,303 - -0.4 982,314 + +0.4 982,314 + -0.3 982,314 + -0.1 982,314 + +0.3 982,314 + +0.0 982,315 - -0.0 982,315 - -0.3 982,315 - -1.2 982,356 + -0.2 982,356 + -0.1 982,357 - +0.1 982,357 - +0.3 982,360 + +0.0 982,360 + -0.0 982,360 + -0.9 982,360 + +0.6 982,360 + +0.1 982,360 + -0.5 982,360 + +0.4 982,360 + +0.2 982,360 + -1.3 982,360 + +0.4 982,360 + +0.1 982,360 + -1.3 982,361 - +0.1 982,361 - -1.2 982,361 - +0.1 982,361 - +0.4 982,361 - +0.6 982,361 - -0.1 982,361 - +0.4 982,361 - +0.2 982,361 - -0.5 982,361 - -0.7 982,361 - +0.8 982,365 + +0.1 982,365 + +0.4 982,365 + -0.6 982,366 - -0.0 982,366 - -0.4 982,366 - +0.1 982,366 - +0.7 982,368 + +0.3 982,408 + yjbE NOLOHH_05325 0.17 -0.5 982,409 - yjbE NOLOHH_05325 0.17 +0.1 982,460 + yjbE NOLOHH_05325 0.38 -0.8 982,538 + yjbE NOLOHH_05325 0.70 -1.6 982,538 + yjbE NOLOHH_05325 0.70 +1.7 982,539 - yjbE NOLOHH_05325 0.71 +0.3 982,539 - yjbE NOLOHH_05325 0.71 +0.2 982,749 + -0.3 982,763 + +0.3 982,763 + +0.5 982,933 + +0.1 983,012 - -1.8 983,148 + pgi NOLOHH_05335 0.11 -0.6 983,248 - pgi NOLOHH_05335 0.17 -2.3 983,248 - pgi NOLOHH_05335 0.17 +0.1 983,269 + pgi NOLOHH_05335 0.18 -0.3 983,348 - pgi NOLOHH_05335 0.23 -0.2 983,418 - pgi NOLOHH_05335 0.28 -1.4 983,488 + pgi NOLOHH_05335 0.32 -0.4 983,535 + pgi NOLOHH_05335 0.35 -1.8 983,535 + pgi NOLOHH_05335 0.35 -1.3 983,535 + pgi NOLOHH_05335 0.35 -2.2 983,535 + pgi NOLOHH_05335 0.35 -1.1 983,535 + pgi NOLOHH_05335 0.35 -1.1 983,535 + pgi NOLOHH_05335 0.35 -0.5 983,536 - pgi NOLOHH_05335 0.35 -1.7 983,536 - pgi NOLOHH_05335 0.35 -1.9 983,536 - pgi NOLOHH_05335 0.35 -2.7 983,536 - pgi NOLOHH_05335 0.35 +0.5 983,536 - pgi NOLOHH_05335 0.35 +0.6 983,536 - pgi NOLOHH_05335 0.35 +1.3 983,536 - pgi NOLOHH_05335 0.35 -0.5 983,536 - pgi NOLOHH_05335 0.35 -0.0 983,539 + pgi NOLOHH_05335 0.35 -1.9 983,571 + pgi NOLOHH_05335 0.37 -1.4 983,572 - pgi NOLOHH_05335 0.37 +0.3 983,590 + pgi NOLOHH_05335 0.38 -1.7 983,590 + pgi NOLOHH_05335 0.38 +0.7 983,590 + pgi NOLOHH_05335 0.38 -1.0 983,590 + pgi NOLOHH_05335 0.38 -2.1 983,590 + pgi NOLOHH_05335 0.38 +0.3 983,590 + pgi NOLOHH_05335 0.38 +1.3 983,590 + pgi NOLOHH_05335 0.38 -1.0 983,590 + pgi NOLOHH_05335 0.38 -2.7 983,591 - pgi NOLOHH_05335 0.38 -0.6 983,591 - pgi NOLOHH_05335 0.38 -1.2 983,591 - pgi NOLOHH_05335 0.38 +0.8 983,591 - pgi NOLOHH_05335 0.38 -3.3 983,591 - pgi NOLOHH_05335 0.38 -0.2 983,591 - pgi NOLOHH_05335 0.38 -0.2 983,591 - pgi NOLOHH_05335 0.38 -0.2 983,591 - pgi NOLOHH_05335 0.38 -1.0 983,591 - pgi NOLOHH_05335 0.38 -1.5 983,591 - pgi NOLOHH_05335 0.38 -0.3 983,591 - pgi NOLOHH_05335 0.38 -2.1 983,591 - pgi NOLOHH_05335 0.38 -0.7 983,592 + pgi NOLOHH_05335 0.38 -0.0 983,593 - pgi NOLOHH_05335 0.38 +0.3 983,593 - pgi NOLOHH_05335 0.38 -0.7 983,593 - pgi NOLOHH_05335 0.38 -2.2 983,644 - pgi NOLOHH_05335 0.41 -0.3 983,644 - pgi NOLOHH_05335 0.41 -0.5 983,749 + pgi NOLOHH_05335 0.48 +0.8 983,750 - pgi NOLOHH_05335 0.48 -0.9 983,968 + pgi NOLOHH_05335 0.61 -2.1 983,969 - pgi NOLOHH_05335 0.61 -0.5 983,969 - pgi NOLOHH_05335 0.61 +0.0 983,992 + pgi NOLOHH_05335 0.62 +0.7 984,126 + pgi NOLOHH_05335 0.70 -0.1 984,127 - pgi NOLOHH_05335 0.70 -0.6 984,127 - pgi NOLOHH_05335 0.70 -2.2 984,165 - pgi NOLOHH_05335 0.73 +0.4 984,190 - pgi NOLOHH_05335 0.74 -1.3 984,211 + pgi NOLOHH_05335 0.76 -1.5 984,266 + pgi NOLOHH_05335 0.79 -2.8 984,266 + pgi NOLOHH_05335 0.79 +1.3 984,266 + pgi NOLOHH_05335 0.79 -0.6 984,267 - pgi NOLOHH_05335 0.79 +0.4 984,267 - pgi NOLOHH_05335 0.79 -1.1 984,267 - pgi NOLOHH_05335 0.79 -1.9 984,376 + pgi NOLOHH_05335 0.86 -0.4 984,376 + pgi NOLOHH_05335 0.86 -1.4 984,496 + -1.0 984,570 - +0.6 984,614 + -0.4 984,620 + -1.4 984,690 + +0.7 984,691 - -0.1 984,705 - +0.5 984,716 + +1.0 984,741 + -0.7 984,741 + -0.7 984,742 - -0.4 984,744 + +0.3 984,753 + -0.6 984,753 + +0.2 984,753 + +0.1 984,754 - +0.5 984,821 + +0.8 984,822 - -2.3 984,825 + +0.9 984,827 + -0.3 984,828 - +0.2 984,828 - -0.3 984,828 - +0.0 984,833 + +0.4 984,833 + +0.8 984,833 + +0.6 984,833 + -2.9 984,833 + +0.2 984,833 + +1.1 984,834 - +0.4 984,834 - +0.1 984,834 - +0.3 984,834 - -1.1 984,834 - -0.0 984,906 + -0.3 984,967 - +0.6 985,050 + -0.7 985,051 - -1.2 985,054 - -1.1 985,061 + +0.5 985,133 + +0.7 985,134 - -1.0 985,134 - +0.0 985,137 + -0.2 985,137 + +0.8 985,137 + +0.2 985,137 + -1.1 985,138 - +0.6 985,138 - -1.1 985,138 - +2.4 985,138 - -0.8 985,138 - +0.0 985,138 - -0.9 985,178 + -0.5 985,178 + -0.0 985,178 + -0.3 985,178 + -1.4 985,178 + +0.7 985,178 + -0.4 985,212 + -0.5 985,213 - -0.0 985,241 + -0.6 985,241 + -0.3 985,242 - -1.9 985,242 - +0.4 985,242 - -0.9 985,244 + -0.9 985,266 + -0.1 985,267 - -1.0 985,272 + +0.0 985,422 + lysC NOLOHH_05340 0.21 +0.4 985,423 - lysC NOLOHH_05340 0.21 +0.9 985,562 + lysC NOLOHH_05340 0.31 +0.0 985,562 + lysC NOLOHH_05340 0.31 -1.5 985,562 + lysC NOLOHH_05340 0.31 -0.3 985,562 + lysC NOLOHH_05340 0.31 -0.3 985,563 - lysC NOLOHH_05340 0.31 +0.3 985,563 - lysC NOLOHH_05340 0.31 +0.5 985,566 + lysC NOLOHH_05340 0.32 +0.7 985,566 + lysC NOLOHH_05340 0.32 -1.2 985,567 - lysC NOLOHH_05340 0.32 -0.3 985,567 - lysC NOLOHH_05340 0.32 +0.5 985,567 - lysC NOLOHH_05340 0.32 -1.0 985,578 + lysC NOLOHH_05340 0.33 -0.4 985,578 + lysC NOLOHH_05340 0.33 -0.9 985,613 + lysC NOLOHH_05340 0.35 -1.2 985,613 + lysC NOLOHH_05340 0.35 -0.8
Or see this region's nucleotide sequence