Strain Fitness in Escherichia coli ECOR27 around NOLOHH_02580

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmap and glnD are separated by 61 nucleotidesglnD and dapD are separated by 30 nucleotides NOLOHH_02575: map - type I methionyl aminopeptidase, at 420,883 to 421,677 map NOLOHH_02580: glnD - bifunctional uridylyltransferase/uridylyl-removing protein GlnD, at 421,739 to 424,411 glnD NOLOHH_02585: dapD - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 424,442 to 425,266 dapD Position (kb) 421 422 423 424 425Strain fitness (log2 ratio) -2 -1 0 1 2at 420.758 kb on + strandat 420.759 kb on - strandat 420.760 kb on + strandat 420.760 kb on + strandat 420.760 kb on + strandat 420.761 kb on - strandat 420.761 kb on - strandat 420.761 kb on - strandat 420.761 kb on - strandat 420.761 kb on - strandat 420.761 kb on - strandat 420.761 kb on - strandat 420.843 kb on + strandat 420.843 kb on + strandat 420.843 kb on + strandat 420.843 kb on + strandat 420.843 kb on + strandat 420.843 kb on + strandat 420.843 kb on + strandat 420.843 kb on + strandat 420.844 kb on - strandat 420.844 kb on - strandat 420.844 kb on - strandat 420.844 kb on - strandat 420.844 kb on - strandat 420.844 kb on - strandat 420.844 kb on - strandat 420.844 kb on - strandat 420.844 kb on - strandat 421.675 kb on + strandat 421.718 kb on + strandat 422.841 kb on + strand, within glnDat 422.841 kb on + strand, within glnDat 425.264 kb on + strandat 425.264 kb on + strandat 425.270 kb on + strandat 425.271 kb on - strandat 425.271 kb on - strandat 425.271 kb on - strandat 425.274 kb on + strandat 425.274 kb on + strandat 425.274 kb on + strandat 425.274 kb on + strandat 425.274 kb on + strandat 425.274 kb on + strandat 425.274 kb on + strandat 425.274 kb on + strandat 425.274 kb on + strandat 425.274 kb on + strandat 425.274 kb on + strandat 425.275 kb on - strandat 425.275 kb on - strandat 425.275 kb on - strandat 425.275 kb on - strandat 425.275 kb on - strandat 425.276 kb on + strandat 425.276 kb on + strandat 425.276 kb on + strandat 425.277 kb on - strandat 425.318 kb on + strandat 425.328 kb on + strandat 425.329 kb on - strandat 425.329 kb on - strandat 425.329 kb on - strandat 425.329 kb on - strandat 425.329 kb on - strandat 425.351 kb on - strandat 425.351 kb on - strandat 425.384 kb on + strandat 425.384 kb on + strandat 425.384 kb on + strandat 425.385 kb on - strandat 425.385 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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420,758 + -1.0
420,759 - +0.2
420,760 + -0.2
420,760 + +0.7
420,760 + -0.7
420,761 - -0.3
420,761 - -0.1
420,761 - -0.2
420,761 - -1.5
420,761 - +0.4
420,761 - -1.0
420,761 - +0.1
420,843 + +1.2
420,843 + +0.6
420,843 + -1.5
420,843 + +0.5
420,843 + -0.6
420,843 + -0.7
420,843 + -0.9
420,843 + -0.2
420,844 - -0.8
420,844 - -0.0
420,844 - -2.7
420,844 - -0.3
420,844 - -0.5
420,844 - -0.3
420,844 - -1.3
420,844 - -2.5
420,844 - +0.8
421,675 + -0.4
421,718 + +1.1
422,841 + glnD NOLOHH_02580 0.41 -1.2
422,841 + glnD NOLOHH_02580 0.41 -2.2
425,264 + +0.2
425,264 + +0.1
425,270 + -0.2
425,271 - +0.1
425,271 - -0.2
425,271 - +0.6
425,274 + -0.1
425,274 + +0.7
425,274 + +0.3
425,274 + +0.3
425,274 + -0.1
425,274 + -0.2
425,274 + +0.3
425,274 + -0.5
425,274 + +0.3
425,274 + +2.2
425,274 + +0.6
425,275 - +0.5
425,275 - +0.7
425,275 - -0.0
425,275 - -0.9
425,275 - +0.6
425,276 + -1.1
425,276 + -0.1
425,276 + +0.4
425,277 - -1.0
425,318 + +1.0
425,328 + -1.7
425,329 - -0.6
425,329 - +0.6
425,329 - +1.3
425,329 - +0.4
425,329 - -0.3
425,351 - +0.4
425,351 - +0.2
425,384 + -0.0
425,384 + +0.8
425,384 + -0.6
425,385 - -0.1
425,385 - +0.1

Or see this region's nucleotide sequence