Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt map and glnD are separated by 61 nucleotides glnD and dapD are separated by 30 nucleotides
NOLOHH_02575: map - type I methionyl aminopeptidase, at 420,883 to 421,677
map
NOLOHH_02580: glnD - bifunctional uridylyltransferase/uridylyl-removing protein GlnD, at 421,739 to 424,411
glnD
NOLOHH_02585: dapD - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 424,442 to 425,266
dapD
Position (kb)
421
422
423
424
425 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 420.758 kb on + strand at 420.759 kb on - strand at 420.760 kb on + strand at 420.760 kb on + strand at 420.760 kb on + strand at 420.761 kb on - strand at 420.761 kb on - strand at 420.761 kb on - strand at 420.761 kb on - strand at 420.761 kb on - strand at 420.761 kb on - strand at 420.761 kb on - strand at 420.843 kb on + strand at 420.843 kb on + strand at 420.843 kb on + strand at 420.843 kb on + strand at 420.843 kb on + strand at 420.843 kb on + strand at 420.843 kb on + strand at 420.843 kb on + strand at 420.844 kb on - strand at 420.844 kb on - strand at 420.844 kb on - strand at 420.844 kb on - strand at 420.844 kb on - strand at 420.844 kb on - strand at 420.844 kb on - strand at 420.844 kb on - strand at 420.844 kb on - strand at 421.675 kb on + strand at 421.718 kb on + strand at 422.841 kb on + strand, within glnD at 422.841 kb on + strand, within glnD at 425.264 kb on + strand at 425.264 kb on + strand at 425.270 kb on + strand at 425.271 kb on - strand at 425.271 kb on - strand at 425.271 kb on - strand at 425.274 kb on + strand at 425.274 kb on + strand at 425.274 kb on + strand at 425.274 kb on + strand at 425.274 kb on + strand at 425.274 kb on + strand at 425.274 kb on + strand at 425.274 kb on + strand at 425.274 kb on + strand at 425.274 kb on + strand at 425.274 kb on + strand at 425.275 kb on - strand at 425.275 kb on - strand at 425.275 kb on - strand at 425.275 kb on - strand at 425.275 kb on - strand at 425.276 kb on + strand at 425.276 kb on + strand at 425.276 kb on + strand at 425.277 kb on - strand at 425.318 kb on + strand at 425.328 kb on + strand at 425.329 kb on - strand at 425.329 kb on - strand at 425.329 kb on - strand at 425.329 kb on - strand at 425.329 kb on - strand at 425.351 kb on - strand at 425.351 kb on - strand at 425.384 kb on + strand at 425.384 kb on + strand at 425.384 kb on + strand at 425.385 kb on - strand at 425.385 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 420,758 + -1.0 420,759 - +0.2 420,760 + -0.2 420,760 + +0.7 420,760 + -0.7 420,761 - -0.3 420,761 - -0.1 420,761 - -0.2 420,761 - -1.5 420,761 - +0.4 420,761 - -1.0 420,761 - +0.1 420,843 + +1.2 420,843 + +0.6 420,843 + -1.5 420,843 + +0.5 420,843 + -0.6 420,843 + -0.7 420,843 + -0.9 420,843 + -0.2 420,844 - -0.8 420,844 - -0.0 420,844 - -2.7 420,844 - -0.3 420,844 - -0.5 420,844 - -0.3 420,844 - -1.3 420,844 - -2.5 420,844 - +0.8 421,675 + -0.4 421,718 + +1.1 422,841 + glnD NOLOHH_02580 0.41 -1.2 422,841 + glnD NOLOHH_02580 0.41 -2.2 425,264 + +0.2 425,264 + +0.1 425,270 + -0.2 425,271 - +0.1 425,271 - -0.2 425,271 - +0.6 425,274 + -0.1 425,274 + +0.7 425,274 + +0.3 425,274 + +0.3 425,274 + -0.1 425,274 + -0.2 425,274 + +0.3 425,274 + -0.5 425,274 + +0.3 425,274 + +2.2 425,274 + +0.6 425,275 - +0.5 425,275 - +0.7 425,275 - -0.0 425,275 - -0.9 425,275 - +0.6 425,276 + -1.1 425,276 + -0.1 425,276 + +0.4 425,277 - -1.0 425,318 + +1.0 425,328 + -1.7 425,329 - -0.6 425,329 - +0.6 425,329 - +1.3 425,329 - +0.4 425,329 - -0.3 425,351 - +0.4 425,351 - +0.2 425,384 + -0.0 425,384 + +0.8 425,384 + -0.6 425,385 - -0.1 425,385 - +0.1
Or see this region's nucleotide sequence