Strain Fitness in Escherichia coli ECOR27 around NOLOHH_02175

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-ISAs1 and yncI are separated by 575 nucleotidesyncI and yncI are separated by 48 nucleotidesyncI and ydcD are separated by 180 nucleotides NOLOHH_02170: tnp-ISAs1 - ISAs1 family transposase, at 339,060 to 340,103 tnp-ISAs1 NOLOHH_02175: yncI - ISAs1 family transposase, at 340,679 to 340,906 yncI NOLOHH_02180: yncI - ISAs1 family transposase, at 340,955 to 341,425 yncI NOLOHH_02185: ydcD - Uncharacterized protein YdcD, at 341,606 to 342,088 ydcD Position (kb) 340 341Strain fitness (log2 ratio) -1 0 1at 340.456 kb on + strandat 340.551 kb on + strandat 340.577 kb on + strandat 340.640 kb on - strandat 340.821 kb on - strand, within yncIat 341.103 kb on - strand, within yncIat 341.245 kb on - strand, within yncIat 341.400 kb on + strandat 341.480 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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340,456 + +0.4
340,551 + +0.3
340,577 + -0.5
340,640 - -1.1
340,821 - yncI NOLOHH_02175 0.62 -0.8
341,103 - yncI NOLOHH_02180 0.31 +0.2
341,245 - yncI NOLOHH_02180 0.62 +0.1
341,400 + -0.5
341,480 + -0.2

Or see this region's nucleotide sequence