Strain Fitness in Escherichia coli ECOR27 around NOLOHH_01270

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntclpX and clpP are separated by 125 nucleotidesclpP and tig are separated by 245 nucleotides NOLOHH_01265: clpX - ATP-dependent protease ATP-binding subunit ClpX, at 145,233 to 146,507 clpX NOLOHH_01270: clpP - ATP-dependent Clp endopeptidase proteolytic subunit ClpP, at 146,633 to 147,256 clpP NOLOHH_01275: tig - trigger factor, at 147,502 to 148,800 tig Position (kb) 146 147 148Strain fitness (log2 ratio) -2 -1 0 1 2at 146.380 kb on - strandat 146.405 kb on - strandat 146.606 kb on + strandat 146.607 kb on - strandat 146.607 kb on - strandat 146.607 kb on - strandat 146.607 kb on - strandat 146.607 kb on - strandat 146.609 kb on - strandat 146.638 kb on + strandat 146.671 kb on - strandat 146.733 kb on - strand, within clpPat 146.888 kb on - strand, within clpPat 146.985 kb on + strand, within clpPat 146.986 kb on - strand, within clpPat 146.990 kb on - strand, within clpPat 147.025 kb on + strand, within clpPat 147.026 kb on - strand, within clpPat 147.026 kb on - strand, within clpPat 147.037 kb on - strand, within clpPat 147.037 kb on - strand, within clpPat 147.037 kb on - strand, within clpPat 147.037 kb on - strand, within clpPat 147.041 kb on - strand, within clpPat 147.142 kb on + strand, within clpPat 147.143 kb on - strand, within clpPat 147.143 kb on - strand, within clpPat 147.302 kb on - strandat 147.302 kb on - strandat 147.302 kb on - strandat 147.302 kb on - strandat 147.302 kb on - strandat 147.325 kb on + strandat 147.326 kb on - strandat 147.338 kb on - strandat 147.356 kb on + strandat 147.357 kb on - strandat 147.367 kb on + strandat 147.384 kb on + strandat 147.482 kb on - strandat 147.490 kb on - strandat 147.499 kb on - strandat 147.910 kb on - strand, within tigat 148.013 kb on - strand, within tigat 148.116 kb on + strand, within tigat 148.117 kb on - strand, within tigat 148.117 kb on - strand, within tigat 148.140 kb on - strand, within tigat 148.222 kb on - strand, within tigat 148.222 kb on - strand, within tig

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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146,380 - -0.5
146,405 - +2.7
146,606 + +0.7
146,607 - -0.3
146,607 - -0.3
146,607 - -0.9
146,607 - -1.0
146,607 - -0.9
146,609 - +0.7
146,638 + +0.2
146,671 - -1.4
146,733 - clpP NOLOHH_01270 0.16 -0.1
146,888 - clpP NOLOHH_01270 0.41 -0.2
146,985 + clpP NOLOHH_01270 0.56 +0.4
146,986 - clpP NOLOHH_01270 0.57 +1.1
146,990 - clpP NOLOHH_01270 0.57 -0.8
147,025 + clpP NOLOHH_01270 0.63 -0.5
147,026 - clpP NOLOHH_01270 0.63 -1.9
147,026 - clpP NOLOHH_01270 0.63 -0.1
147,037 - clpP NOLOHH_01270 0.65 -0.8
147,037 - clpP NOLOHH_01270 0.65 -1.4
147,037 - clpP NOLOHH_01270 0.65 +0.7
147,037 - clpP NOLOHH_01270 0.65 +0.7
147,041 - clpP NOLOHH_01270 0.65 +0.7
147,142 + clpP NOLOHH_01270 0.82 +1.1
147,143 - clpP NOLOHH_01270 0.82 -1.0
147,143 - clpP NOLOHH_01270 0.82 -0.1
147,302 - +0.6
147,302 - +0.1
147,302 - -0.4
147,302 - -2.0
147,302 - -0.5
147,325 + -1.5
147,326 - -0.6
147,338 - -0.2
147,356 + -0.7
147,357 - +0.3
147,367 + +0.4
147,384 + -0.1
147,482 - +0.1
147,490 - -0.3
147,499 - -0.5
147,910 - tig NOLOHH_01275 0.31 -1.7
148,013 - tig NOLOHH_01275 0.39 +0.5
148,116 + tig NOLOHH_01275 0.47 +1.7
148,117 - tig NOLOHH_01275 0.47 -0.4
148,117 - tig NOLOHH_01275 0.47 +0.4
148,140 - tig NOLOHH_01275 0.49 +1.0
148,222 - tig NOLOHH_01275 0.55 -1.4
148,222 - tig NOLOHH_01275 0.55 +0.4

Or see this region's nucleotide sequence