Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdlA and decR are separated by 29 nucleotides decR and cof are separated by 152 nucleotides
NOLOHH_01210: mdlA - SmdA family multidrug ABC transporter permease/ATP-binding protein, at 133,290 to 135,062
mdlA
NOLOHH_01215: decR - DNA-binding transcriptional regulator DecR, at 135,092 to 135,550
decR
NOLOHH_01220: cof - HMP-PP phosphatase, at 135,703 to 136,521
cof
Position (kb) 135
136 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 134.141 kb on - strand, within mdlA at 134.168 kb on + strand, within mdlA at 134.212 kb on - strand, within mdlA at 134.212 kb on - strand, within mdlA at 134.215 kb on + strand, within mdlA at 134.215 kb on + strand, within mdlA at 134.216 kb on - strand, within mdlA at 134.216 kb on - strand, within mdlA at 134.216 kb on - strand, within mdlA at 134.223 kb on - strand, within mdlA at 134.223 kb on - strand, within mdlA at 134.304 kb on - strand, within mdlA at 134.317 kb on + strand, within mdlA at 134.317 kb on + strand, within mdlA at 134.317 kb on + strand, within mdlA at 134.317 kb on + strand, within mdlA at 134.317 kb on + strand, within mdlA at 134.318 kb on - strand, within mdlA at 134.318 kb on - strand, within mdlA at 134.318 kb on - strand, within mdlA at 134.318 kb on - strand, within mdlA at 134.398 kb on - strand, within mdlA at 134.475 kb on - strand, within mdlA at 134.505 kb on - strand, within mdlA at 134.578 kb on - strand, within mdlA at 134.595 kb on - strand, within mdlA at 134.613 kb on - strand, within mdlA at 134.699 kb on + strand, within mdlA at 134.740 kb on + strand, within mdlA at 134.741 kb on - strand, within mdlA at 134.910 kb on - strand at 134.943 kb on - strand at 134.943 kb on - strand at 135.034 kb on + strand at 135.042 kb on + strand at 135.043 kb on - strand at 135.043 kb on - strand at 135.094 kb on - strand at 135.117 kb on + strand at 135.118 kb on - strand at 135.121 kb on + strand at 135.121 kb on + strand at 135.121 kb on + strand at 135.122 kb on - strand at 135.122 kb on - strand at 135.122 kb on - strand at 135.187 kb on + strand, within decR at 135.189 kb on + strand, within decR at 135.190 kb on - strand, within decR at 135.190 kb on - strand, within decR at 135.190 kb on - strand, within decR at 135.202 kb on - strand, within decR at 135.238 kb on - strand, within decR at 135.516 kb on - strand at 135.550 kb on + strand at 135.551 kb on - strand at 135.614 kb on + strand at 135.716 kb on + strand at 135.721 kb on + strand at 135.721 kb on + strand at 135.721 kb on + strand at 135.722 kb on - strand at 135.722 kb on - strand at 135.722 kb on - strand at 135.794 kb on - strand, within cof at 135.794 kb on - strand, within cof at 135.840 kb on + strand, within cof at 135.841 kb on - strand, within cof at 135.841 kb on - strand, within cof at 135.841 kb on - strand, within cof at 135.917 kb on - strand, within cof at 135.922 kb on + strand, within cof at 135.922 kb on + strand, within cof at 136.034 kb on + strand, within cof at 136.034 kb on + strand, within cof at 136.034 kb on + strand, within cof at 136.035 kb on - strand, within cof at 136.036 kb on + strand, within cof at 136.056 kb on + strand, within cof at 136.056 kb on + strand, within cof at 136.056 kb on + strand, within cof at 136.057 kb on - strand, within cof at 136.212 kb on + strand, within cof at 136.213 kb on - strand, within cof at 136.213 kb on - strand, within cof at 136.213 kb on - strand, within cof at 136.340 kb on + strand, within cof at 136.340 kb on + strand, within cof at 136.341 kb on - strand, within cof at 136.444 kb on - strand at 136.463 kb on - strand at 136.463 kb on - strand at 136.463 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 134,141 - mdlA NOLOHH_01210 0.48 +0.7 134,168 + mdlA NOLOHH_01210 0.50 -0.0 134,212 - mdlA NOLOHH_01210 0.52 -0.2 134,212 - mdlA NOLOHH_01210 0.52 +0.7 134,215 + mdlA NOLOHH_01210 0.52 +0.3 134,215 + mdlA NOLOHH_01210 0.52 +1.1 134,216 - mdlA NOLOHH_01210 0.52 -0.8 134,216 - mdlA NOLOHH_01210 0.52 +1.0 134,216 - mdlA NOLOHH_01210 0.52 +1.6 134,223 - mdlA NOLOHH_01210 0.53 -1.2 134,223 - mdlA NOLOHH_01210 0.53 -1.3 134,304 - mdlA NOLOHH_01210 0.57 +0.7 134,317 + mdlA NOLOHH_01210 0.58 +1.3 134,317 + mdlA NOLOHH_01210 0.58 +1.5 134,317 + mdlA NOLOHH_01210 0.58 -1.3 134,317 + mdlA NOLOHH_01210 0.58 -0.2 134,317 + mdlA NOLOHH_01210 0.58 +0.2 134,318 - mdlA NOLOHH_01210 0.58 +0.4 134,318 - mdlA NOLOHH_01210 0.58 +0.2 134,318 - mdlA NOLOHH_01210 0.58 -1.2 134,318 - mdlA NOLOHH_01210 0.58 +0.7 134,398 - mdlA NOLOHH_01210 0.62 +0.3 134,475 - mdlA NOLOHH_01210 0.67 +0.4 134,505 - mdlA NOLOHH_01210 0.69 -0.3 134,578 - mdlA NOLOHH_01210 0.73 +1.5 134,595 - mdlA NOLOHH_01210 0.74 +1.0 134,613 - mdlA NOLOHH_01210 0.75 +0.2 134,699 + mdlA NOLOHH_01210 0.79 +0.3 134,740 + mdlA NOLOHH_01210 0.82 +0.7 134,741 - mdlA NOLOHH_01210 0.82 +0.1 134,910 - -0.8 134,943 - -1.3 134,943 - -2.3 135,034 + +0.1 135,042 + -0.1 135,043 - +0.1 135,043 - +0.7 135,094 - +0.4 135,117 + -0.8 135,118 - -0.1 135,121 + -0.6 135,121 + +0.4 135,121 + -1.0 135,122 - +0.1 135,122 - +0.0 135,122 - -1.4 135,187 + decR NOLOHH_01215 0.21 -0.3 135,189 + decR NOLOHH_01215 0.21 -0.5 135,190 - decR NOLOHH_01215 0.21 -2.7 135,190 - decR NOLOHH_01215 0.21 -2.5 135,190 - decR NOLOHH_01215 0.21 -0.4 135,202 - decR NOLOHH_01215 0.24 +1.0 135,238 - decR NOLOHH_01215 0.32 -3.1 135,516 - +0.7 135,550 + -0.0 135,551 - -0.0 135,614 + +0.0 135,716 + -0.2 135,721 + +0.0 135,721 + -0.4 135,721 + -0.9 135,722 - +0.9 135,722 - -0.4 135,722 - -0.6 135,794 - cof NOLOHH_01220 0.11 -0.5 135,794 - cof NOLOHH_01220 0.11 +0.3 135,840 + cof NOLOHH_01220 0.17 +0.4 135,841 - cof NOLOHH_01220 0.17 -1.5 135,841 - cof NOLOHH_01220 0.17 +0.1 135,841 - cof NOLOHH_01220 0.17 -0.1 135,917 - cof NOLOHH_01220 0.26 +0.6 135,922 + cof NOLOHH_01220 0.27 +0.9 135,922 + cof NOLOHH_01220 0.27 +0.3 136,034 + cof NOLOHH_01220 0.40 -0.2 136,034 + cof NOLOHH_01220 0.40 +0.1 136,034 + cof NOLOHH_01220 0.40 -0.5 136,035 - cof NOLOHH_01220 0.41 -0.1 136,036 + cof NOLOHH_01220 0.41 +1.7 136,056 + cof NOLOHH_01220 0.43 -0.2 136,056 + cof NOLOHH_01220 0.43 +0.6 136,056 + cof NOLOHH_01220 0.43 +0.3 136,057 - cof NOLOHH_01220 0.43 +1.2 136,212 + cof NOLOHH_01220 0.62 -0.2 136,213 - cof NOLOHH_01220 0.62 +0.3 136,213 - cof NOLOHH_01220 0.62 -0.2 136,213 - cof NOLOHH_01220 0.62 -1.4 136,340 + cof NOLOHH_01220 0.78 -0.3 136,340 + cof NOLOHH_01220 0.78 +0.2 136,341 - cof NOLOHH_01220 0.78 +0.8 136,444 - +0.2 136,463 - +1.2 136,463 - -0.2 136,463 - +0.0
Or see this region's nucleotide sequence