Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00445

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_00430 and NOLOHH_00435 are separated by 61 nucleotidesNOLOHH_00435 and NOLOHH_00440 are separated by 36 nucleotidesNOLOHH_00440 and NOLOHH_00445 are separated by 90 nucleotidesNOLOHH_00445 and NOLOHH_00450 are separated by 103 nucleotidesNOLOHH_00450 and NOLOHH_00455 are separated by 40 nucleotides NOLOHH_00430: NOLOHH_00430 - Putative integral membrane protein, at 29,315 to 29,530 _00430 NOLOHH_00435: NOLOHH_00435 - hypothetical protein, at 29,592 to 29,876 _00435 NOLOHH_00440: NOLOHH_00440 - hypothetical protein, at 29,913 to 30,215 _00440 NOLOHH_00445: NOLOHH_00445 - peptidyl-arginine deiminase, at 30,306 to 30,965 _00445 NOLOHH_00450: NOLOHH_00450 - resolvase, at 31,069 to 31,893 _00450 NOLOHH_00455: NOLOHH_00455 - hypothetical protein, at 31,934 to 32,422 _00455 Position (kb) 30 31Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 29.322 kb on - strandat 29.426 kb on + strand, within NOLOHH_00430at 29.474 kb on - strand, within NOLOHH_00430at 29.474 kb on - strand, within NOLOHH_00430at 29.474 kb on - strand, within NOLOHH_00430at 29.530 kb on + strandat 29.664 kb on + strand, within NOLOHH_00435at 29.664 kb on + strand, within NOLOHH_00435at 29.664 kb on + strand, within NOLOHH_00435at 29.668 kb on + strand, within NOLOHH_00435at 29.669 kb on - strand, within NOLOHH_00435at 29.705 kb on - strand, within NOLOHH_00435at 29.723 kb on - strand, within NOLOHH_00435at 29.730 kb on + strand, within NOLOHH_00435at 29.731 kb on - strand, within NOLOHH_00435at 29.788 kb on - strand, within NOLOHH_00435at 29.789 kb on + strand, within NOLOHH_00435at 29.790 kb on - strand, within NOLOHH_00435at 29.790 kb on - strand, within NOLOHH_00435at 29.882 kb on + strandat 29.910 kb on - strandat 29.915 kb on - strandat 30.262 kb on - strandat 30.273 kb on - strandat 30.273 kb on - strandat 30.273 kb on - strandat 30.277 kb on - strandat 30.423 kb on - strand, within NOLOHH_00445at 30.431 kb on - strand, within NOLOHH_00445at 30.431 kb on - strand, within NOLOHH_00445at 30.431 kb on - strand, within NOLOHH_00445at 30.431 kb on - strand, within NOLOHH_00445at 30.431 kb on - strand, within NOLOHH_00445at 30.434 kb on + strand, within NOLOHH_00445at 30.718 kb on + strand, within NOLOHH_00445at 30.719 kb on - strand, within NOLOHH_00445at 30.719 kb on - strand, within NOLOHH_00445at 30.779 kb on - strand, within NOLOHH_00445at 30.880 kb on - strand, within NOLOHH_00445at 30.924 kb on + strandat 31.023 kb on - strandat 31.023 kb on - strandat 31.025 kb on - strandat 31.031 kb on - strandat 31.269 kb on - strand, within NOLOHH_00450at 31.378 kb on + strand, within NOLOHH_00450at 31.378 kb on + strand, within NOLOHH_00450at 31.378 kb on + strand, within NOLOHH_00450at 31.378 kb on + strand, within NOLOHH_00450at 31.378 kb on + strand, within NOLOHH_00450at 31.379 kb on - strand, within NOLOHH_00450at 31.379 kb on - strand, within NOLOHH_00450at 31.379 kb on - strand, within NOLOHH_00450at 31.428 kb on - strand, within NOLOHH_00450at 31.437 kb on + strand, within NOLOHH_00450at 31.449 kb on - strand, within NOLOHH_00450at 31.478 kb on - strand, within NOLOHH_00450at 31.519 kb on + strand, within NOLOHH_00450at 31.519 kb on + strand, within NOLOHH_00450at 31.519 kb on + strand, within NOLOHH_00450at 31.519 kb on + strand, within NOLOHH_00450at 31.520 kb on - strand, within NOLOHH_00450at 31.520 kb on - strand, within NOLOHH_00450at 31.520 kb on - strand, within NOLOHH_00450at 31.581 kb on + strand, within NOLOHH_00450at 31.581 kb on + strand, within NOLOHH_00450at 31.582 kb on - strand, within NOLOHH_00450at 31.582 kb on - strand, within NOLOHH_00450at 31.582 kb on - strand, within NOLOHH_00450at 31.582 kb on - strand, within NOLOHH_00450at 31.582 kb on - strand, within NOLOHH_00450at 31.635 kb on + strand, within NOLOHH_00450at 31.636 kb on - strand, within NOLOHH_00450at 31.703 kb on + strand, within NOLOHH_00450at 31.703 kb on + strand, within NOLOHH_00450at 31.707 kb on + strand, within NOLOHH_00450at 31.707 kb on + strand, within NOLOHH_00450at 31.707 kb on + strand, within NOLOHH_00450at 31.707 kb on + strand, within NOLOHH_00450at 31.708 kb on - strand, within NOLOHH_00450at 31.731 kb on - strand, within NOLOHH_00450at 31.837 kb on + strandat 31.837 kb on + strandat 31.837 kb on + strandat 31.936 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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29,322 - +0.4
29,426 + NOLOHH_00430 0.51 -0.3
29,474 - NOLOHH_00430 0.74 -1.2
29,474 - NOLOHH_00430 0.74 -0.6
29,474 - NOLOHH_00430 0.74 -0.4
29,530 + +0.1
29,664 + NOLOHH_00435 0.25 -0.5
29,664 + NOLOHH_00435 0.25 +0.1
29,664 + NOLOHH_00435 0.25 -0.2
29,668 + NOLOHH_00435 0.27 -0.1
29,669 - NOLOHH_00435 0.27 -0.1
29,705 - NOLOHH_00435 0.40 +0.4
29,723 - NOLOHH_00435 0.46 -0.5
29,730 + NOLOHH_00435 0.48 +0.0
29,731 - NOLOHH_00435 0.49 -0.3
29,788 - NOLOHH_00435 0.69 +0.2
29,789 + NOLOHH_00435 0.69 -0.3
29,790 - NOLOHH_00435 0.69 -0.3
29,790 - NOLOHH_00435 0.69 +0.1
29,882 + -0.1
29,910 - -0.8
29,915 - -0.4
30,262 - -0.1
30,273 - +0.3
30,273 - +0.3
30,273 - -0.4
30,277 - -0.1
30,423 - NOLOHH_00445 0.18 -0.4
30,431 - NOLOHH_00445 0.19 -2.6
30,431 - NOLOHH_00445 0.19 -1.3
30,431 - NOLOHH_00445 0.19 -1.3
30,431 - NOLOHH_00445 0.19 -1.7
30,431 - NOLOHH_00445 0.19 +0.1
30,434 + NOLOHH_00445 0.19 -1.1
30,718 + NOLOHH_00445 0.62 -0.7
30,719 - NOLOHH_00445 0.63 -3.8
30,719 - NOLOHH_00445 0.63 -1.7
30,779 - NOLOHH_00445 0.72 -2.3
30,880 - NOLOHH_00445 0.87 -0.9
30,924 + -2.3
31,023 - -0.1
31,023 - +0.1
31,025 - -0.4
31,031 - -0.5
31,269 - NOLOHH_00450 0.24 +0.2
31,378 + NOLOHH_00450 0.37 +0.3
31,378 + NOLOHH_00450 0.37 +0.0
31,378 + NOLOHH_00450 0.37 -0.0
31,378 + NOLOHH_00450 0.37 +0.1
31,378 + NOLOHH_00450 0.37 -0.1
31,379 - NOLOHH_00450 0.38 +0.1
31,379 - NOLOHH_00450 0.38 -0.5
31,379 - NOLOHH_00450 0.38 +0.2
31,428 - NOLOHH_00450 0.44 -0.1
31,437 + NOLOHH_00450 0.45 +0.3
31,449 - NOLOHH_00450 0.46 +0.3
31,478 - NOLOHH_00450 0.50 -0.1
31,519 + NOLOHH_00450 0.55 -0.1
31,519 + NOLOHH_00450 0.55 -0.1
31,519 + NOLOHH_00450 0.55 -0.1
31,519 + NOLOHH_00450 0.55 +0.2
31,520 - NOLOHH_00450 0.55 +0.4
31,520 - NOLOHH_00450 0.55 +0.3
31,520 - NOLOHH_00450 0.55 +0.0
31,581 + NOLOHH_00450 0.62 +0.2
31,581 + NOLOHH_00450 0.62 -0.7
31,582 - NOLOHH_00450 0.62 +0.3
31,582 - NOLOHH_00450 0.62 -0.8
31,582 - NOLOHH_00450 0.62 -0.0
31,582 - NOLOHH_00450 0.62 +0.9
31,582 - NOLOHH_00450 0.62 +0.4
31,635 + NOLOHH_00450 0.69 +0.2
31,636 - NOLOHH_00450 0.69 -0.4
31,703 + NOLOHH_00450 0.77 -0.1
31,703 + NOLOHH_00450 0.77 -0.1
31,707 + NOLOHH_00450 0.77 +0.1
31,707 + NOLOHH_00450 0.77 +0.1
31,707 + NOLOHH_00450 0.77 +0.5
31,707 + NOLOHH_00450 0.77 -0.1
31,708 - NOLOHH_00450 0.77 -0.1
31,731 - NOLOHH_00450 0.80 +0.0
31,837 + +0.7
31,837 + +0.2
31,837 + +1.7
31,936 - -0.0

Or see this region's nucleotide sequence