Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00240

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_00235 and NOLOHH_00240 are separated by 18 nucleotidesNOLOHH_00240 and NOLOHH_00245 are separated by 3 nucleotidesNOLOHH_00245 and NOLOHH_00250 are separated by 9 nucleotides NOLOHH_00235: NOLOHH_00235 - TrbL/VirB6 plasmid conjugal transfer protein, at 29,173 to 30,216 _00235 NOLOHH_00240: NOLOHH_00240 - Entry exclusion protein, at 30,235 to 30,471 _00240 NOLOHH_00245: NOLOHH_00245 - type IV secretion system protein, at 30,475 to 31,182 _00245 NOLOHH_00250: NOLOHH_00250 - conjugal transfer protein TraB, at 31,192 to 33,822 _00250 Position (kb) 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 29.272 kb on - strandat 29.272 kb on - strandat 29.272 kb on - strandat 29.301 kb on + strand, within NOLOHH_00235at 29.302 kb on - strand, within NOLOHH_00235at 29.364 kb on + strand, within NOLOHH_00235at 29.371 kb on + strand, within NOLOHH_00235at 29.372 kb on - strand, within NOLOHH_00235at 29.394 kb on + strand, within NOLOHH_00235at 29.394 kb on + strand, within NOLOHH_00235at 29.394 kb on + strand, within NOLOHH_00235at 29.394 kb on + strand, within NOLOHH_00235at 29.394 kb on + strand, within NOLOHH_00235at 29.395 kb on - strand, within NOLOHH_00235at 29.395 kb on - strand, within NOLOHH_00235at 29.395 kb on - strand, within NOLOHH_00235at 29.395 kb on - strand, within NOLOHH_00235at 29.395 kb on - strand, within NOLOHH_00235at 29.395 kb on - strand, within NOLOHH_00235at 29.395 kb on - strand, within NOLOHH_00235at 29.395 kb on - strand, within NOLOHH_00235at 29.395 kb on - strand, within NOLOHH_00235at 29.396 kb on - strand, within NOLOHH_00235at 29.444 kb on + strand, within NOLOHH_00235at 29.444 kb on + strand, within NOLOHH_00235at 29.444 kb on + strand, within NOLOHH_00235at 29.445 kb on - strand, within NOLOHH_00235at 29.445 kb on - strand, within NOLOHH_00235at 29.537 kb on + strand, within NOLOHH_00235at 29.538 kb on - strand, within NOLOHH_00235at 29.544 kb on + strand, within NOLOHH_00235at 29.544 kb on + strand, within NOLOHH_00235at 29.544 kb on + strand, within NOLOHH_00235at 29.545 kb on - strand, within NOLOHH_00235at 29.545 kb on - strand, within NOLOHH_00235at 29.545 kb on - strand, within NOLOHH_00235at 29.592 kb on - strand, within NOLOHH_00235at 29.595 kb on + strand, within NOLOHH_00235at 29.596 kb on - strand, within NOLOHH_00235at 29.596 kb on - strand, within NOLOHH_00235at 29.596 kb on - strand, within NOLOHH_00235at 29.596 kb on - strand, within NOLOHH_00235at 29.596 kb on - strand, within NOLOHH_00235at 29.596 kb on - strand, within NOLOHH_00235at 29.616 kb on + strand, within NOLOHH_00235at 29.616 kb on + strand, within NOLOHH_00235at 29.617 kb on - strand, within NOLOHH_00235at 29.631 kb on - strand, within NOLOHH_00235at 29.631 kb on - strand, within NOLOHH_00235at 29.631 kb on - strand, within NOLOHH_00235at 29.658 kb on + strand, within NOLOHH_00235at 29.659 kb on - strand, within NOLOHH_00235at 29.659 kb on - strand, within NOLOHH_00235at 29.659 kb on - strand, within NOLOHH_00235at 29.664 kb on + strand, within NOLOHH_00235at 29.665 kb on - strand, within NOLOHH_00235at 29.665 kb on - strand, within NOLOHH_00235at 29.696 kb on - strand, within NOLOHH_00235at 29.710 kb on + strand, within NOLOHH_00235at 29.752 kb on - strand, within NOLOHH_00235at 29.774 kb on - strand, within NOLOHH_00235at 29.774 kb on - strand, within NOLOHH_00235at 29.796 kb on + strand, within NOLOHH_00235at 29.796 kb on + strand, within NOLOHH_00235at 29.798 kb on + strand, within NOLOHH_00235at 29.798 kb on + strand, within NOLOHH_00235at 29.799 kb on - strand, within NOLOHH_00235at 29.799 kb on - strand, within NOLOHH_00235at 29.799 kb on - strand, within NOLOHH_00235at 29.802 kb on + strand, within NOLOHH_00235at 29.802 kb on + strand, within NOLOHH_00235at 29.803 kb on - strand, within NOLOHH_00235at 29.803 kb on - strand, within NOLOHH_00235at 29.824 kb on - strand, within NOLOHH_00235at 29.907 kb on + strand, within NOLOHH_00235at 29.969 kb on + strand, within NOLOHH_00235at 29.998 kb on + strand, within NOLOHH_00235at 30.025 kb on + strand, within NOLOHH_00235at 30.061 kb on + strand, within NOLOHH_00235at 30.066 kb on + strand, within NOLOHH_00235at 30.066 kb on + strand, within NOLOHH_00235at 30.066 kb on + strand, within NOLOHH_00235at 30.066 kb on + strand, within NOLOHH_00235at 30.066 kb on + strand, within NOLOHH_00235at 30.067 kb on - strand, within NOLOHH_00235at 30.067 kb on - strand, within NOLOHH_00235at 30.067 kb on - strand, within NOLOHH_00235at 30.067 kb on - strand, within NOLOHH_00235at 30.067 kb on - strand, within NOLOHH_00235at 30.131 kb on - strandat 30.132 kb on + strandat 30.132 kb on + strandat 30.132 kb on + strandat 30.133 kb on - strandat 30.133 kb on - strandat 30.133 kb on - strandat 30.133 kb on - strandat 30.133 kb on - strandat 30.147 kb on + strandat 30.182 kb on + strandat 30.182 kb on + strandat 30.183 kb on - strandat 30.183 kb on - strandat 30.202 kb on - strandat 30.233 kb on - strandat 30.375 kb on + strand, within NOLOHH_00240at 30.399 kb on - strand, within NOLOHH_00240at 30.399 kb on - strand, within NOLOHH_00240at 30.448 kb on + strandat 30.448 kb on + strandat 30.449 kb on - strandat 30.449 kb on - strandat 30.449 kb on - strandat 30.454 kb on + strandat 30.454 kb on + strandat 30.455 kb on - strandat 30.455 kb on - strandat 30.476 kb on + strandat 30.484 kb on + strandat 30.484 kb on + strandat 30.485 kb on - strandat 30.542 kb on + strandat 30.543 kb on - strandat 30.543 kb on - strandat 30.624 kb on + strand, within NOLOHH_00245at 30.624 kb on + strand, within NOLOHH_00245at 30.743 kb on + strand, within NOLOHH_00245at 30.743 kb on + strand, within NOLOHH_00245at 30.743 kb on + strand, within NOLOHH_00245at 30.743 kb on + strand, within NOLOHH_00245at 30.770 kb on + strand, within NOLOHH_00245at 30.770 kb on + strand, within NOLOHH_00245at 30.771 kb on - strand, within NOLOHH_00245at 30.798 kb on + strand, within NOLOHH_00245at 30.828 kb on + strand, within NOLOHH_00245at 30.829 kb on - strand, within NOLOHH_00245at 30.911 kb on + strand, within NOLOHH_00245at 30.912 kb on - strand, within NOLOHH_00245at 30.912 kb on - strand, within NOLOHH_00245at 30.912 kb on - strand, within NOLOHH_00245at 30.912 kb on - strand, within NOLOHH_00245at 30.912 kb on - strand, within NOLOHH_00245at 30.912 kb on - strand, within NOLOHH_00245at 30.913 kb on + strand, within NOLOHH_00245at 30.913 kb on + strand, within NOLOHH_00245at 30.913 kb on + strand, within NOLOHH_00245at 30.914 kb on - strand, within NOLOHH_00245at 30.914 kb on - strand, within NOLOHH_00245at 30.914 kb on - strand, within NOLOHH_00245at 30.934 kb on + strand, within NOLOHH_00245at 30.934 kb on + strand, within NOLOHH_00245at 30.934 kb on + strand, within NOLOHH_00245at 30.934 kb on + strand, within NOLOHH_00245at 30.935 kb on - strand, within NOLOHH_00245at 30.951 kb on + strand, within NOLOHH_00245at 30.952 kb on - strand, within NOLOHH_00245at 30.952 kb on - strand, within NOLOHH_00245at 30.954 kb on + strand, within NOLOHH_00245at 30.954 kb on + strand, within NOLOHH_00245at 30.954 kb on + strand, within NOLOHH_00245at 30.954 kb on + strand, within NOLOHH_00245at 30.954 kb on + strand, within NOLOHH_00245at 30.955 kb on - strand, within NOLOHH_00245at 30.955 kb on - strand, within NOLOHH_00245at 30.955 kb on - strand, within NOLOHH_00245at 30.975 kb on + strand, within NOLOHH_00245at 30.990 kb on + strand, within NOLOHH_00245at 31.063 kb on + strand, within NOLOHH_00245at 31.107 kb on + strand, within NOLOHH_00245at 31.108 kb on - strand, within NOLOHH_00245at 31.111 kb on + strand, within NOLOHH_00245at 31.111 kb on + strand, within NOLOHH_00245at 31.112 kb on - strandat 31.125 kb on + strandat 31.126 kb on - strandat 31.143 kb on + strandat 31.153 kb on + strandat 31.154 kb on - strandat 31.154 kb on - strandat 31.165 kb on + strandat 31.165 kb on + strandat 31.165 kb on + strandat 31.166 kb on - strandat 31.166 kb on - strandat 31.166 kb on - strandat 31.166 kb on - strandat 31.166 kb on - strandat 31.166 kb on - strandat 31.188 kb on + strandat 31.233 kb on + strandat 31.234 kb on - strandat 31.311 kb on + strandat 31.311 kb on + strandat 31.311 kb on + strandat 31.320 kb on + strandat 31.393 kb on - strandat 31.393 kb on - strandat 31.431 kb on + strandat 31.432 kb on - strandat 31.432 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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29,272 - -0.2
29,272 - -0.3
29,272 - +0.0
29,301 + NOLOHH_00235 0.12 +0.3
29,302 - NOLOHH_00235 0.12 +0.2
29,364 + NOLOHH_00235 0.18 +0.4
29,371 + NOLOHH_00235 0.19 +0.1
29,372 - NOLOHH_00235 0.19 -0.5
29,394 + NOLOHH_00235 0.21 +0.6
29,394 + NOLOHH_00235 0.21 +0.0
29,394 + NOLOHH_00235 0.21 +0.1
29,394 + NOLOHH_00235 0.21 +0.9
29,394 + NOLOHH_00235 0.21 +0.0
29,395 - NOLOHH_00235 0.21 -0.1
29,395 - NOLOHH_00235 0.21 -0.1
29,395 - NOLOHH_00235 0.21 -0.6
29,395 - NOLOHH_00235 0.21 -0.2
29,395 - NOLOHH_00235 0.21 -0.6
29,395 - NOLOHH_00235 0.21 +0.7
29,395 - NOLOHH_00235 0.21 -0.6
29,395 - NOLOHH_00235 0.21 -0.0
29,395 - NOLOHH_00235 0.21 -0.3
29,396 - NOLOHH_00235 0.21 -0.8
29,444 + NOLOHH_00235 0.26 +0.1
29,444 + NOLOHH_00235 0.26 +0.1
29,444 + NOLOHH_00235 0.26 -0.3
29,445 - NOLOHH_00235 0.26 -0.3
29,445 - NOLOHH_00235 0.26 +0.3
29,537 + NOLOHH_00235 0.35 +0.1
29,538 - NOLOHH_00235 0.35 +0.0
29,544 + NOLOHH_00235 0.36 +0.0
29,544 + NOLOHH_00235 0.36 +0.4
29,544 + NOLOHH_00235 0.36 -0.2
29,545 - NOLOHH_00235 0.36 +0.2
29,545 - NOLOHH_00235 0.36 +0.1
29,545 - NOLOHH_00235 0.36 +0.3
29,592 - NOLOHH_00235 0.40 -0.3
29,595 + NOLOHH_00235 0.40 -0.6
29,596 - NOLOHH_00235 0.41 +1.3
29,596 - NOLOHH_00235 0.41 -0.3
29,596 - NOLOHH_00235 0.41 +0.3
29,596 - NOLOHH_00235 0.41 +0.3
29,596 - NOLOHH_00235 0.41 +1.1
29,596 - NOLOHH_00235 0.41 +0.3
29,616 + NOLOHH_00235 0.42 +0.3
29,616 + NOLOHH_00235 0.42 -0.2
29,617 - NOLOHH_00235 0.43 -0.9
29,631 - NOLOHH_00235 0.44 +0.3
29,631 - NOLOHH_00235 0.44 +0.6
29,631 - NOLOHH_00235 0.44 -1.0
29,658 + NOLOHH_00235 0.46 -0.1
29,659 - NOLOHH_00235 0.47 -0.0
29,659 - NOLOHH_00235 0.47 -0.3
29,659 - NOLOHH_00235 0.47 +0.2
29,664 + NOLOHH_00235 0.47 -0.3
29,665 - NOLOHH_00235 0.47 -0.2
29,665 - NOLOHH_00235 0.47 +0.5
29,696 - NOLOHH_00235 0.50 +0.1
29,710 + NOLOHH_00235 0.51 -0.7
29,752 - NOLOHH_00235 0.55 -0.4
29,774 - NOLOHH_00235 0.58 +0.5
29,774 - NOLOHH_00235 0.58 -0.4
29,796 + NOLOHH_00235 0.60 +0.5
29,796 + NOLOHH_00235 0.60 +0.3
29,798 + NOLOHH_00235 0.60 -0.3
29,798 + NOLOHH_00235 0.60 -1.0
29,799 - NOLOHH_00235 0.60 +0.3
29,799 - NOLOHH_00235 0.60 +0.4
29,799 - NOLOHH_00235 0.60 -0.0
29,802 + NOLOHH_00235 0.60 -0.1
29,802 + NOLOHH_00235 0.60 +0.8
29,803 - NOLOHH_00235 0.60 +0.6
29,803 - NOLOHH_00235 0.60 -0.0
29,824 - NOLOHH_00235 0.62 +0.3
29,907 + NOLOHH_00235 0.70 -0.7
29,969 + NOLOHH_00235 0.76 -0.2
29,998 + NOLOHH_00235 0.79 -0.3
30,025 + NOLOHH_00235 0.82 +0.1
30,061 + NOLOHH_00235 0.85 +0.3
30,066 + NOLOHH_00235 0.86 +0.4
30,066 + NOLOHH_00235 0.86 -0.0
30,066 + NOLOHH_00235 0.86 -0.9
30,066 + NOLOHH_00235 0.86 -0.0
30,066 + NOLOHH_00235 0.86 -0.5
30,067 - NOLOHH_00235 0.86 +0.6
30,067 - NOLOHH_00235 0.86 +0.3
30,067 - NOLOHH_00235 0.86 +0.3
30,067 - NOLOHH_00235 0.86 +0.0
30,067 - NOLOHH_00235 0.86 -0.1
30,131 - -0.2
30,132 + -0.5
30,132 + +0.1
30,132 + -0.4
30,133 - +1.1
30,133 - +0.2
30,133 - -0.1
30,133 - -0.2
30,133 - -0.5
30,147 + -0.9
30,182 + +0.6
30,182 + -0.3
30,183 - +2.5
30,183 - +0.1
30,202 - +0.3
30,233 - -0.4
30,375 + NOLOHH_00240 0.59 -0.5
30,399 - NOLOHH_00240 0.69 -0.8
30,399 - NOLOHH_00240 0.69 -2.1
30,448 + -1.1
30,448 + -0.5
30,449 - -0.4
30,449 - -0.6
30,449 - -0.2
30,454 + +0.2
30,454 + -0.0
30,455 - -0.1
30,455 - -0.9
30,476 + -0.2
30,484 + +0.2
30,484 + +0.5
30,485 - +0.1
30,542 + +0.3
30,543 - -0.1
30,543 - -0.3
30,624 + NOLOHH_00245 0.21 +0.7
30,624 + NOLOHH_00245 0.21 +0.1
30,743 + NOLOHH_00245 0.38 +0.6
30,743 + NOLOHH_00245 0.38 -0.8
30,743 + NOLOHH_00245 0.38 +0.1
30,743 + NOLOHH_00245 0.38 -0.2
30,770 + NOLOHH_00245 0.42 -0.4
30,770 + NOLOHH_00245 0.42 +0.6
30,771 - NOLOHH_00245 0.42 -0.9
30,798 + NOLOHH_00245 0.46 +0.3
30,828 + NOLOHH_00245 0.50 +0.4
30,829 - NOLOHH_00245 0.50 -0.3
30,911 + NOLOHH_00245 0.62 +0.0
30,912 - NOLOHH_00245 0.62 -0.8
30,912 - NOLOHH_00245 0.62 -0.4
30,912 - NOLOHH_00245 0.62 +0.2
30,912 - NOLOHH_00245 0.62 -0.3
30,912 - NOLOHH_00245 0.62 -0.1
30,912 - NOLOHH_00245 0.62 -0.4
30,913 + NOLOHH_00245 0.62 -0.5
30,913 + NOLOHH_00245 0.62 -0.6
30,913 + NOLOHH_00245 0.62 +0.1
30,914 - NOLOHH_00245 0.62 -1.2
30,914 - NOLOHH_00245 0.62 -0.1
30,914 - NOLOHH_00245 0.62 -1.1
30,934 + NOLOHH_00245 0.65 +1.1
30,934 + NOLOHH_00245 0.65 -0.4
30,934 + NOLOHH_00245 0.65 -0.1
30,934 + NOLOHH_00245 0.65 -0.0
30,935 - NOLOHH_00245 0.65 +0.3
30,951 + NOLOHH_00245 0.67 +0.9
30,952 - NOLOHH_00245 0.67 -0.4
30,952 - NOLOHH_00245 0.67 -0.3
30,954 + NOLOHH_00245 0.68 +0.8
30,954 + NOLOHH_00245 0.68 -0.3
30,954 + NOLOHH_00245 0.68 -0.8
30,954 + NOLOHH_00245 0.68 +0.3
30,954 + NOLOHH_00245 0.68 +0.0
30,955 - NOLOHH_00245 0.68 +0.9
30,955 - NOLOHH_00245 0.68 -0.5
30,955 - NOLOHH_00245 0.68 -0.1
30,975 + NOLOHH_00245 0.71 +0.5
30,990 + NOLOHH_00245 0.73 -0.3
31,063 + NOLOHH_00245 0.83 +0.2
31,107 + NOLOHH_00245 0.89 -0.3
31,108 - NOLOHH_00245 0.89 +0.4
31,111 + NOLOHH_00245 0.90 -0.5
31,111 + NOLOHH_00245 0.90 +0.1
31,112 - -0.6
31,125 + -0.5
31,126 - +0.1
31,143 + +0.0
31,153 + -0.5
31,154 - -1.0
31,154 - -0.1
31,165 + -0.3
31,165 + -1.1
31,165 + -0.6
31,166 - -0.5
31,166 - -0.3
31,166 - -0.6
31,166 - -0.2
31,166 - -0.2
31,166 - -0.6
31,188 + -0.1
31,233 + -0.7
31,234 - -0.2
31,311 + +0.6
31,311 + -0.1
31,311 + -0.8
31,320 + +0.1
31,393 - -0.3
31,393 - -3.2
31,431 + +0.1
31,432 - -1.0
31,432 - -0.7

Or see this region's nucleotide sequence