Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00165 and NOLOHH_00170 are separated by 213 nucleotides NOLOHH_00170 and NOLOHH_00175 are separated by 1 nucleotides NOLOHH_00175 and NOLOHH_00180 are separated by 12 nucleotides NOLOHH_00180 and NOLOHH_00185 are separated by 431 nucleotides
NOLOHH_00165: NOLOHH_00165 - sprT domain-containing protein, at 15,867 to 16,637
_00165
NOLOHH_00170: NOLOHH_00170 - hypothetical protein, at 16,851 to 17,219
_00170
NOLOHH_00175: NOLOHH_00175 - StdB protein, at 17,221 to 17,931
_00175
NOLOHH_00180: NOLOHH_00180 - Plasmid stability protein stbA, at 17,944 to 18,387
_00180
NOLOHH_00185: NOLOHH_00185 - hypothetical protein, at 18,819 to 19,166
_00185
Position (kb) 17
18 Strain fitness (log2 ratio) -1
0
1 at 16.234 kb on + strand, within NOLOHH_00165 at 16.234 kb on + strand, within NOLOHH_00165 at 16.234 kb on + strand, within NOLOHH_00165 at 16.234 kb on + strand, within NOLOHH_00165 at 16.235 kb on - strand, within NOLOHH_00165 at 16.235 kb on - strand, within NOLOHH_00165 at 16.263 kb on - strand, within NOLOHH_00165 at 16.263 kb on - strand, within NOLOHH_00165 at 16.291 kb on - strand, within NOLOHH_00165 at 16.291 kb on - strand, within NOLOHH_00165 at 16.435 kb on + strand, within NOLOHH_00165 at 16.435 kb on + strand, within NOLOHH_00165 at 16.475 kb on + strand, within NOLOHH_00165 at 16.475 kb on + strand, within NOLOHH_00165 at 16.476 kb on - strand, within NOLOHH_00165 at 16.507 kb on + strand, within NOLOHH_00165 at 16.508 kb on - strand, within NOLOHH_00165 at 16.508 kb on - strand, within NOLOHH_00165 at 16.513 kb on + strand, within NOLOHH_00165 at 16.513 kb on + strand, within NOLOHH_00165 at 16.513 kb on + strand, within NOLOHH_00165 at 16.513 kb on + strand, within NOLOHH_00165 at 16.513 kb on + strand, within NOLOHH_00165 at 16.514 kb on - strand, within NOLOHH_00165 at 16.514 kb on - strand, within NOLOHH_00165 at 16.514 kb on - strand, within NOLOHH_00165 at 16.514 kb on - strand, within NOLOHH_00165 at 16.542 kb on - strand, within NOLOHH_00165 at 16.569 kb on + strand at 16.569 kb on + strand at 16.612 kb on + strand at 16.612 kb on + strand at 16.612 kb on + strand at 16.612 kb on + strand at 16.871 kb on + strand at 16.871 kb on + strand at 17.080 kb on - strand, within NOLOHH_00170 at 17.197 kb on - strand at 17.418 kb on - strand, within NOLOHH_00175 at 17.466 kb on + strand, within NOLOHH_00175 at 17.547 kb on + strand, within NOLOHH_00175 at 17.680 kb on - strand, within NOLOHH_00175 at 17.887 kb on - strand at 17.909 kb on + strand at 17.909 kb on + strand at 17.910 kb on - strand at 17.965 kb on + strand at 17.966 kb on - strand at 18.073 kb on - strand, within NOLOHH_00180 at 18.073 kb on - strand, within NOLOHH_00180 at 18.113 kb on - strand, within NOLOHH_00180 at 18.113 kb on - strand, within NOLOHH_00180 at 18.113 kb on - strand, within NOLOHH_00180 at 18.162 kb on + strand, within NOLOHH_00180 at 18.162 kb on + strand, within NOLOHH_00180 at 18.192 kb on + strand, within NOLOHH_00180 at 18.193 kb on - strand, within NOLOHH_00180 at 18.318 kb on + strand, within NOLOHH_00180 at 18.319 kb on - strand, within NOLOHH_00180 at 18.319 kb on - strand, within NOLOHH_00180 at 18.322 kb on + strand, within NOLOHH_00180 at 18.323 kb on - strand, within NOLOHH_00180 at 18.391 kb on - strand at 18.391 kb on - strand at 18.424 kb on - strand at 18.503 kb on - strand at 18.603 kb on - strand at 18.635 kb on - strand at 18.655 kb on + strand at 18.835 kb on + strand at 18.836 kb on - strand at 18.897 kb on + strand, within NOLOHH_00185 at 18.897 kb on + strand, within NOLOHH_00185 at 18.897 kb on + strand, within NOLOHH_00185
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 16,234 + NOLOHH_00165 0.48 -0.2 16,234 + NOLOHH_00165 0.48 +0.1 16,234 + NOLOHH_00165 0.48 -0.0 16,234 + NOLOHH_00165 0.48 +0.3 16,235 - NOLOHH_00165 0.48 +0.5 16,235 - NOLOHH_00165 0.48 +0.7 16,263 - NOLOHH_00165 0.51 +0.5 16,263 - NOLOHH_00165 0.51 +0.4 16,291 - NOLOHH_00165 0.55 -0.2 16,291 - NOLOHH_00165 0.55 -0.5 16,435 + NOLOHH_00165 0.74 -0.1 16,435 + NOLOHH_00165 0.74 -0.8 16,475 + NOLOHH_00165 0.79 +0.0 16,475 + NOLOHH_00165 0.79 -0.3 16,476 - NOLOHH_00165 0.79 -0.4 16,507 + NOLOHH_00165 0.83 -0.0 16,508 - NOLOHH_00165 0.83 -0.1 16,508 - NOLOHH_00165 0.83 -0.0 16,513 + NOLOHH_00165 0.84 +0.3 16,513 + NOLOHH_00165 0.84 -0.4 16,513 + NOLOHH_00165 0.84 -0.1 16,513 + NOLOHH_00165 0.84 +0.4 16,513 + NOLOHH_00165 0.84 +0.1 16,514 - NOLOHH_00165 0.84 -0.3 16,514 - NOLOHH_00165 0.84 +0.6 16,514 - NOLOHH_00165 0.84 -0.2 16,514 - NOLOHH_00165 0.84 +0.6 16,542 - NOLOHH_00165 0.88 +0.1 16,569 + +0.2 16,569 + +0.8 16,612 + -0.1 16,612 + +0.4 16,612 + -0.2 16,612 + +0.1 16,871 + -0.6 16,871 + -0.2 17,080 - NOLOHH_00170 0.62 +0.1 17,197 - -0.9 17,418 - NOLOHH_00175 0.28 -0.5 17,466 + NOLOHH_00175 0.34 -0.7 17,547 + NOLOHH_00175 0.46 -1.2 17,680 - NOLOHH_00175 0.65 -1.0 17,887 - -0.3 17,909 + -0.5 17,909 + -1.2 17,910 - +1.4 17,965 + -1.3 17,966 - -0.7 18,073 - NOLOHH_00180 0.29 -0.1 18,073 - NOLOHH_00180 0.29 -1.1 18,113 - NOLOHH_00180 0.38 -0.7 18,113 - NOLOHH_00180 0.38 -0.3 18,113 - NOLOHH_00180 0.38 -0.8 18,162 + NOLOHH_00180 0.49 -0.9 18,162 + NOLOHH_00180 0.49 -0.1 18,192 + NOLOHH_00180 0.56 -0.2 18,193 - NOLOHH_00180 0.56 -0.3 18,318 + NOLOHH_00180 0.84 -1.5 18,319 - NOLOHH_00180 0.84 +0.1 18,319 - NOLOHH_00180 0.84 +0.8 18,322 + NOLOHH_00180 0.85 -0.3 18,323 - NOLOHH_00180 0.85 -0.7 18,391 - -1.6 18,391 - +0.3 18,424 - -0.1 18,503 - -0.3 18,603 - -0.0 18,635 - -0.1 18,655 + -0.6 18,835 + -0.1 18,836 - +0.2 18,897 + NOLOHH_00185 0.22 -0.5 18,897 + NOLOHH_00185 0.22 +0.0 18,897 + NOLOHH_00185 0.22 -0.2
Or see this region's nucleotide sequence