Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hisS and yfgM are separated by 17 nucleotides yfgM and bamB are separated by 10 nucleotides
NOLOHH_13380: hisS - histidine--tRNA ligase, at 2,597,380 to 2,598,654
hisS
NOLOHH_13385: yfgM - ancillary SecYEG translocon subunit YfgM, at 2,598,672 to 2,599,292
yfgM
NOLOHH_13390: bamB - outer membrane protein assembly factor BamB, at 2,599,303 to 2,600,481
bamB
Position (kb)
2598
2599
2600 Strain fitness (log2 ratio)
-2
-1
0
1 at 2598.923 kb on + strand, within yfgM at 2598.927 kb on + strand, within yfgM at 2598.927 kb on + strand, within yfgM at 2598.927 kb on + strand, within yfgM at 2598.927 kb on + strand, within yfgM at 2599.003 kb on + strand, within yfgM at 2599.205 kb on + strand, within yfgM at 2599.277 kb on + strand at 2599.277 kb on + strand at 2599.319 kb on + strand at 2599.480 kb on + strand, within bamB at 2599.480 kb on + strand, within bamB at 2599.519 kb on + strand, within bamB at 2599.519 kb on + strand, within bamB at 2599.669 kb on + strand, within bamB at 2599.669 kb on + strand, within bamB at 2599.669 kb on + strand, within bamB at 2599.707 kb on + strand, within bamB at 2599.737 kb on + strand, within bamB at 2599.737 kb on + strand, within bamB at 2599.737 kb on + strand, within bamB at 2599.790 kb on + strand, within bamB at 2599.857 kb on + strand, within bamB at 2599.995 kb on + strand, within bamB at 2600.089 kb on + strand, within bamB at 2600.089 kb on + strand, within bamB at 2600.089 kb on + strand, within bamB at 2600.089 kb on + strand, within bamB at 2600.090 kb on - strand, within bamB at 2600.133 kb on + strand, within bamB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 2,598,923 + yfgM NOLOHH_13385 0.40 +0.0 2,598,927 + yfgM NOLOHH_13385 0.41 -0.5 2,598,927 + yfgM NOLOHH_13385 0.41 -1.5 2,598,927 + yfgM NOLOHH_13385 0.41 +0.9 2,598,927 + yfgM NOLOHH_13385 0.41 +0.7 2,599,003 + yfgM NOLOHH_13385 0.53 +1.1 2,599,205 + yfgM NOLOHH_13385 0.86 -0.4 2,599,277 + +1.1 2,599,277 + -0.5 2,599,319 + -0.3 2,599,480 + bamB NOLOHH_13390 0.15 -1.8 2,599,480 + bamB NOLOHH_13390 0.15 +0.6 2,599,519 + bamB NOLOHH_13390 0.18 -1.8 2,599,519 + bamB NOLOHH_13390 0.18 -1.8 2,599,669 + bamB NOLOHH_13390 0.31 +0.0 2,599,669 + bamB NOLOHH_13390 0.31 -0.8 2,599,669 + bamB NOLOHH_13390 0.31 -0.7 2,599,707 + bamB NOLOHH_13390 0.34 -2.1 2,599,737 + bamB NOLOHH_13390 0.37 +0.6 2,599,737 + bamB NOLOHH_13390 0.37 -1.5 2,599,737 + bamB NOLOHH_13390 0.37 +0.4 2,599,790 + bamB NOLOHH_13390 0.41 -1.1 2,599,857 + bamB NOLOHH_13390 0.47 +0.6 2,599,995 + bamB NOLOHH_13390 0.59 -0.6 2,600,089 + bamB NOLOHH_13390 0.67 -1.5 2,600,089 + bamB NOLOHH_13390 0.67 +0.2 2,600,089 + bamB NOLOHH_13390 0.67 -2.2 2,600,089 + bamB NOLOHH_13390 0.67 -1.0 2,600,090 - bamB NOLOHH_13390 0.67 +1.5 2,600,133 + bamB NOLOHH_13390 0.70 -0.4
Or see this region's nucleotide sequence