Strain Fitness in Escherichia coli ECOR27 around NOLOHH_13385

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthisS and yfgM are separated by 17 nucleotidesyfgM and bamB are separated by 10 nucleotides NOLOHH_13380: hisS - histidine--tRNA ligase, at 2,597,380 to 2,598,654 hisS NOLOHH_13385: yfgM - ancillary SecYEG translocon subunit YfgM, at 2,598,672 to 2,599,292 yfgM NOLOHH_13390: bamB - outer membrane protein assembly factor BamB, at 2,599,303 to 2,600,481 bamB Position (kb) 2598 2599 2600Strain fitness (log2 ratio) -2 -1 0 1at 2598.923 kb on + strand, within yfgMat 2598.927 kb on + strand, within yfgMat 2598.927 kb on + strand, within yfgMat 2598.927 kb on + strand, within yfgMat 2598.927 kb on + strand, within yfgMat 2599.003 kb on + strand, within yfgMat 2599.205 kb on + strand, within yfgMat 2599.277 kb on + strandat 2599.277 kb on + strandat 2599.319 kb on + strandat 2599.480 kb on + strand, within bamBat 2599.480 kb on + strand, within bamBat 2599.519 kb on + strand, within bamBat 2599.519 kb on + strand, within bamBat 2599.669 kb on + strand, within bamBat 2599.669 kb on + strand, within bamBat 2599.669 kb on + strand, within bamBat 2599.707 kb on + strand, within bamBat 2599.737 kb on + strand, within bamBat 2599.737 kb on + strand, within bamBat 2599.737 kb on + strand, within bamBat 2599.790 kb on + strand, within bamBat 2599.857 kb on + strand, within bamBat 2599.995 kb on + strand, within bamBat 2600.089 kb on + strand, within bamBat 2600.089 kb on + strand, within bamBat 2600.089 kb on + strand, within bamBat 2600.089 kb on + strand, within bamBat 2600.090 kb on - strand, within bamBat 2600.133 kb on + strand, within bamB

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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2,598,923 + yfgM NOLOHH_13385 0.40 +0.0
2,598,927 + yfgM NOLOHH_13385 0.41 -0.5
2,598,927 + yfgM NOLOHH_13385 0.41 -1.5
2,598,927 + yfgM NOLOHH_13385 0.41 +0.9
2,598,927 + yfgM NOLOHH_13385 0.41 +0.7
2,599,003 + yfgM NOLOHH_13385 0.53 +1.1
2,599,205 + yfgM NOLOHH_13385 0.86 -0.4
2,599,277 + +1.1
2,599,277 + -0.5
2,599,319 + -0.3
2,599,480 + bamB NOLOHH_13390 0.15 -1.8
2,599,480 + bamB NOLOHH_13390 0.15 +0.6
2,599,519 + bamB NOLOHH_13390 0.18 -1.8
2,599,519 + bamB NOLOHH_13390 0.18 -1.8
2,599,669 + bamB NOLOHH_13390 0.31 +0.0
2,599,669 + bamB NOLOHH_13390 0.31 -0.8
2,599,669 + bamB NOLOHH_13390 0.31 -0.7
2,599,707 + bamB NOLOHH_13390 0.34 -2.1
2,599,737 + bamB NOLOHH_13390 0.37 +0.6
2,599,737 + bamB NOLOHH_13390 0.37 -1.5
2,599,737 + bamB NOLOHH_13390 0.37 +0.4
2,599,790 + bamB NOLOHH_13390 0.41 -1.1
2,599,857 + bamB NOLOHH_13390 0.47 +0.6
2,599,995 + bamB NOLOHH_13390 0.59 -0.6
2,600,089 + bamB NOLOHH_13390 0.67 -1.5
2,600,089 + bamB NOLOHH_13390 0.67 +0.2
2,600,089 + bamB NOLOHH_13390 0.67 -2.2
2,600,089 + bamB NOLOHH_13390 0.67 -1.0
2,600,090 - bamB NOLOHH_13390 0.67 +1.5
2,600,133 + bamB NOLOHH_13390 0.70 -0.4

Or see this region's nucleotide sequence