Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS21045 and ABI39_RS21050 are separated by 60 nucleotides ABI39_RS21050 and ABI39_RS21055 are separated by 12 nucleotides ABI39_RS21055 and ABI39_RS21060 are separated by 21 nucleotides
ABI39_RS21045: ABI39_RS21045 - tryptophan synthase subunit beta, at 5,181,887 to 5,183,086
_RS21045
ABI39_RS21050: ABI39_RS21050 - anthranilate synthase component I family protein, at 5,183,147 to 5,184,547
_RS21050
ABI39_RS21055: ABI39_RS21055 - aminodeoxychorismate/anthranilate synthase component II, at 5,184,560 to 5,185,150
_RS21055
ABI39_RS21060: ABI39_RS21060 - anthranilate phosphoribosyltransferase, at 5,185,172 to 5,186,167
_RS21060
Position (kb) 5183
5184
5185 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 5182.292 kb on + strand, within ABI39_RS21045 at 5182.449 kb on - strand, within ABI39_RS21045 at 5182.449 kb on - strand, within ABI39_RS21045 at 5182.451 kb on + strand, within ABI39_RS21045 at 5182.566 kb on - strand, within ABI39_RS21045 at 5182.574 kb on + strand, within ABI39_RS21045 at 5182.628 kb on + strand, within ABI39_RS21045 at 5182.628 kb on + strand, within ABI39_RS21045 at 5182.629 kb on - strand, within ABI39_RS21045 at 5182.633 kb on - strand, within ABI39_RS21045 at 5182.933 kb on + strand, within ABI39_RS21045 at 5183.091 kb on + strand at 5183.128 kb on + strand at 5183.200 kb on + strand at 5183.212 kb on + strand at 5183.227 kb on - strand at 5183.271 kb on - strand at 5183.456 kb on + strand, within ABI39_RS21050 at 5183.571 kb on - strand, within ABI39_RS21050 at 5183.578 kb on - strand, within ABI39_RS21050 at 5183.585 kb on + strand, within ABI39_RS21050 at 5183.696 kb on + strand, within ABI39_RS21050 at 5183.696 kb on + strand, within ABI39_RS21050 at 5183.697 kb on - strand, within ABI39_RS21050 at 5184.174 kb on - strand, within ABI39_RS21050 at 5184.391 kb on + strand, within ABI39_RS21050 at 5184.584 kb on + strand at 5184.585 kb on - strand at 5184.761 kb on + strand, within ABI39_RS21055 at 5184.981 kb on + strand, within ABI39_RS21055 at 5185.164 kb on + strand at 5185.167 kb on + strand at 5185.262 kb on + strand at 5185.400 kb on - strand, within ABI39_RS21060 at 5185.404 kb on + strand, within ABI39_RS21060 at 5185.404 kb on + strand, within ABI39_RS21060 at 5185.408 kb on + strand, within ABI39_RS21060 at 5185.503 kb on - strand, within ABI39_RS21060 at 5185.503 kb on - strand, within ABI39_RS21060
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 5,182,292 + ABI39_RS21045 0.34 -4.0 5,182,449 - ABI39_RS21045 0.47 -4.9 5,182,449 - ABI39_RS21045 0.47 -3.9 5,182,451 + ABI39_RS21045 0.47 -1.6 5,182,566 - ABI39_RS21045 0.57 -1.8 5,182,574 + ABI39_RS21045 0.57 -2.5 5,182,628 + ABI39_RS21045 0.62 -1.2 5,182,628 + ABI39_RS21045 0.62 -4.5 5,182,629 - ABI39_RS21045 0.62 -2.9 5,182,633 - ABI39_RS21045 0.62 -3.0 5,182,933 + ABI39_RS21045 0.87 -3.6 5,183,091 + -1.7 5,183,128 + -1.0 5,183,200 + -3.5 5,183,212 + -4.0 5,183,227 - -3.5 5,183,271 - -4.2 5,183,456 + ABI39_RS21050 0.22 -4.8 5,183,571 - ABI39_RS21050 0.30 -3.7 5,183,578 - ABI39_RS21050 0.31 -4.1 5,183,585 + ABI39_RS21050 0.31 -4.1 5,183,696 + ABI39_RS21050 0.39 -3.7 5,183,696 + ABI39_RS21050 0.39 -5.2 5,183,697 - ABI39_RS21050 0.39 -2.5 5,184,174 - ABI39_RS21050 0.73 -4.0 5,184,391 + ABI39_RS21050 0.89 -3.0 5,184,584 + -4.6 5,184,585 - -5.2 5,184,761 + ABI39_RS21055 0.34 -3.5 5,184,981 + ABI39_RS21055 0.71 -2.0 5,185,164 + -0.4 5,185,167 + -2.3 5,185,262 + -5.4 5,185,400 - ABI39_RS21060 0.23 -5.1 5,185,404 + ABI39_RS21060 0.23 -5.3 5,185,404 + ABI39_RS21060 0.23 -3.3 5,185,408 + ABI39_RS21060 0.24 -5.7 5,185,503 - ABI39_RS21060 0.33 -3.9 5,185,503 - ABI39_RS21060 0.33 -3.5
Or see this region's nucleotide sequence