Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS20955

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
5,157,763	+				+0.3
5,157,923	+		ABI39_RS20950	0.26	-0.7
5,158,003	+		ABI39_RS20950	0.35	-0.5
5,158,017	+		ABI39_RS20950	0.36	-0.4
5,158,017	+		ABI39_RS20950	0.36	-0.5
5,158,023	+		ABI39_RS20950	0.37	-0.1
5,158,026	-		ABI39_RS20950	0.38	-1.5
5,158,037	+		ABI39_RS20950	0.39	-0.9
5,158,100	+		ABI39_RS20950	0.46	-1.4
5,158,101	-		ABI39_RS20950	0.46	-2.0
5,158,161	-		ABI39_RS20950	0.53	-0.6
5,158,162	+		ABI39_RS20950	0.53	-1.0
5,158,203	-		ABI39_RS20950	0.57	-0.1
5,158,205	+		ABI39_RS20950	0.58	+0.5
5,158,233	-		ABI39_RS20950	0.61	+0.7
5,158,233	-		ABI39_RS20950	0.61	-0.3
5,158,257	-		ABI39_RS20950	0.64	-0.8
5,158,263	-		ABI39_RS20950	0.64	-0.3
5,158,263	-		ABI39_RS20950	0.64	-0.5
5,158,351	-		ABI39_RS20950	0.74	+0.5
5,158,372	+		ABI39_RS20950	0.76	-0.7
5,158,372	+		ABI39_RS20950	0.76	+0.3
5,158,382	-		ABI39_RS20950	0.78	+0.2
5,158,382	-		ABI39_RS20950	0.78	+0.4
5,158,407	-		ABI39_RS20950	0.80	-0.6
5,158,451	+		ABI39_RS20950	0.85	-0.3
5,158,454	-		ABI39_RS20950	0.86	+0.2
5,158,478	-		ABI39_RS20950	0.88	+0.0
5,158,511	+				-2.0
5,158,581	+				+0.4
5,158,581	+				-0.4
5,158,582	-				-1.3
5,158,689	+				-0.4
5,158,689	+				-1.1
5,158,707	+				-0.8
5,158,708	-				-1.9
5,158,717	+				-0.2
5,158,755	-		ABI39_RS20955	0.11	-0.6
5,158,799	+		ABI39_RS20955	0.15	+0.0
5,158,800	-		ABI39_RS20955	0.15	-0.4
5,158,925	-		ABI39_RS20955	0.27	+0.2
5,158,925	-		ABI39_RS20955	0.27	-1.2
5,159,006	-		ABI39_RS20955	0.34	-1.4
5,159,006	-		ABI39_RS20955	0.34	-1.4
5,159,022	+		ABI39_RS20955	0.36	-0.9
5,159,023	-		ABI39_RS20955	0.36	+0.3
5,159,038	-		ABI39_RS20955	0.37	+0.6
5,159,109	+		ABI39_RS20955	0.44	-0.6
5,159,110	-		ABI39_RS20955	0.44	+0.3
5,159,226	+		ABI39_RS20955	0.55	-0.7
5,159,267	-		ABI39_RS20955	0.59	-0.9
5,159,293	-		ABI39_RS20955	0.61	-2.4
5,159,364	+		ABI39_RS20955	0.68	-0.2
5,159,488	-		ABI39_RS20955	0.79	-0.4
5,159,500	-		ABI39_RS20955	0.80	-0.9
5,159,674	+				-0.4
5,159,691	+				-1.3
5,159,702	+				+0.1
5,159,804	+				+0.4
5,159,805	-				+0.5
5,159,821	+				+0.0
5,159,828	+				-0.2
5,159,830	+				+0.2
5,159,877	+				-0.1
5,159,880	+				-0.3
5,159,931	+				+0.2
5,159,936	-				+0.4
5,159,936	-				+0.3
5,159,936	-				+0.2
5,159,951	+				-0.9
5,160,018	+				-0.1
5,160,033	+				-0.3
5,160,048	+				+0.0
5,160,051	+				+0.3
5,160,051	+				+0.8
5,160,051	+				-0.3
5,160,054	-				+0.1
5,160,055	+				+0.1
5,160,084	-				-0.4
5,160,258	+		ABI39_RS20960	0.17	-0.3
5,160,335	+		ABI39_RS20960	0.25	-0.0
5,160,350	-		ABI39_RS20960	0.27	-0.1
5,160,387	+		ABI39_RS20960	0.31	-0.0
5,160,387	+		ABI39_RS20960	0.31	-0.4
5,160,388	-		ABI39_RS20960	0.31	+1.0
5,160,408	+		ABI39_RS20960	0.33	-0.9
5,160,432	+		ABI39_RS20960	0.36	-0.3
5,160,539	-		ABI39_RS20960	0.47	-0.6
5,160,539	-		ABI39_RS20960	0.47	+0.3
5,160,546	-		ABI39_RS20960	0.47	-0.4
5,160,627	+		ABI39_RS20960	0.56	-0.2
5,160,640	-		ABI39_RS20960	0.57	+0.3
5,160,676	-		ABI39_RS20960	0.61	-0.9