Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS16875 and ABI39_RS16880 are separated by 13 nucleotides ABI39_RS16880 and ABI39_RS16885 are separated by 18 nucleotides ABI39_RS16885 and ABI39_RS16890 are separated by 24 nucleotides ABI39_RS16890 and ABI39_RS16895 are separated by 18 nucleotides
ABI39_RS16875: ABI39_RS16875 - NADH:ubiquinone reductase (Na(+)-transporting) subunit B, at 4,281,081 to 4,282,289
_RS16875
ABI39_RS16880: ABI39_RS16880 - Na(+)-translocating NADH-quinone reductase subunit C, at 4,282,303 to 4,282,977
_RS16880
ABI39_RS16885: ABI39_RS16885 - NADH:ubiquinone reductase (Na(+)-transporting) subunit D, at 4,282,996 to 4,283,634
_RS16885
ABI39_RS16890: ABI39_RS16890 - NADH:ubiquinone reductase (Na(+)-transporting) subunit E, at 4,283,659 to 4,284,255
_RS16890
ABI39_RS16895: ABI39_RS16895 - NADH:ubiquinone reductase (Na(+)-transporting) subunit F, at 4,284,274 to 4,285,548
_RS16895
Position (kb) 4282
4283
4284 Strain fitness (log2 ratio) -2
-1
0
1 at 4282.113 kb on + strand, within ABI39_RS16875 at 4282.114 kb on - strand, within ABI39_RS16875 at 4282.144 kb on + strand, within ABI39_RS16875 at 4282.232 kb on + strand at 4282.280 kb on + strand at 4282.281 kb on - strand at 4282.287 kb on + strand at 4282.315 kb on - strand at 4282.317 kb on + strand at 4282.317 kb on + strand at 4282.318 kb on - strand at 4282.324 kb on + strand at 4282.324 kb on + strand at 4282.325 kb on - strand at 4282.326 kb on + strand at 4282.326 kb on + strand at 4282.329 kb on + strand at 4282.410 kb on + strand, within ABI39_RS16880 at 4282.410 kb on + strand, within ABI39_RS16880 at 4282.411 kb on - strand, within ABI39_RS16880 at 4282.411 kb on - strand, within ABI39_RS16880 at 4282.411 kb on - strand, within ABI39_RS16880 at 4282.462 kb on + strand, within ABI39_RS16880 at 4282.571 kb on - strand, within ABI39_RS16880 at 4282.619 kb on + strand, within ABI39_RS16880 at 4282.636 kb on + strand, within ABI39_RS16880 at 4282.637 kb on - strand, within ABI39_RS16880 at 4282.715 kb on + strand, within ABI39_RS16880 at 4282.779 kb on + strand, within ABI39_RS16880 at 4282.919 kb on + strand at 4282.932 kb on + strand at 4282.951 kb on + strand at 4282.951 kb on + strand at 4282.975 kb on + strand at 4283.208 kb on + strand, within ABI39_RS16885 at 4283.291 kb on + strand, within ABI39_RS16885 at 4283.311 kb on + strand, within ABI39_RS16885 at 4283.316 kb on - strand, within ABI39_RS16885 at 4283.338 kb on - strand, within ABI39_RS16885 at 4283.367 kb on + strand, within ABI39_RS16885 at 4283.665 kb on + strand at 4283.681 kb on - strand at 4283.771 kb on + strand, within ABI39_RS16890 at 4283.808 kb on - strand, within ABI39_RS16890 at 4283.874 kb on - strand, within ABI39_RS16890 at 4284.018 kb on + strand, within ABI39_RS16890 at 4284.297 kb on + strand at 4284.301 kb on - strand at 4284.339 kb on + strand at 4284.390 kb on - strand at 4284.393 kb on + strand at 4284.419 kb on + strand, within ABI39_RS16895 at 4284.420 kb on - strand, within ABI39_RS16895 at 4284.463 kb on - strand, within ABI39_RS16895
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 4,282,113 + ABI39_RS16875 0.85 -2.1 4,282,114 - ABI39_RS16875 0.85 -0.8 4,282,144 + ABI39_RS16875 0.88 -1.4 4,282,232 + -2.1 4,282,280 + -0.4 4,282,281 - -0.8 4,282,287 + -0.5 4,282,315 - -1.4 4,282,317 + -1.6 4,282,317 + +1.2 4,282,318 - -1.4 4,282,324 + +0.2 4,282,324 + -1.6 4,282,325 - -1.6 4,282,326 + +0.2 4,282,326 + -0.4 4,282,329 + -2.0 4,282,410 + ABI39_RS16880 0.16 -1.4 4,282,410 + ABI39_RS16880 0.16 +0.6 4,282,411 - ABI39_RS16880 0.16 -1.1 4,282,411 - ABI39_RS16880 0.16 -1.6 4,282,411 - ABI39_RS16880 0.16 -0.8 4,282,462 + ABI39_RS16880 0.24 -2.3 4,282,571 - ABI39_RS16880 0.40 -2.0 4,282,619 + ABI39_RS16880 0.47 -1.4 4,282,636 + ABI39_RS16880 0.49 -0.8 4,282,637 - ABI39_RS16880 0.49 -2.1 4,282,715 + ABI39_RS16880 0.61 +0.2 4,282,779 + ABI39_RS16880 0.71 -1.4 4,282,919 + +0.2 4,282,932 + +1.2 4,282,951 + -0.4 4,282,951 + -2.1 4,282,975 + -0.9 4,283,208 + ABI39_RS16885 0.33 -0.8 4,283,291 + ABI39_RS16885 0.46 -2.1 4,283,311 + ABI39_RS16885 0.49 -1.8 4,283,316 - ABI39_RS16885 0.50 -1.6 4,283,338 - ABI39_RS16885 0.54 -1.1 4,283,367 + ABI39_RS16885 0.58 -1.8 4,283,665 + -1.4 4,283,681 - +1.2 4,283,771 + ABI39_RS16890 0.19 -1.8 4,283,808 - ABI39_RS16890 0.25 +0.2 4,283,874 - ABI39_RS16890 0.36 -1.8 4,284,018 + ABI39_RS16890 0.60 -0.4 4,284,297 + -2.0 4,284,301 - -2.0 4,284,339 + -2.3 4,284,390 - -1.4 4,284,393 + -0.4 4,284,419 + ABI39_RS16895 0.11 -2.0 4,284,420 - ABI39_RS16895 0.11 +1.2 4,284,463 - ABI39_RS16895 0.15 -2.1
Or see this region's nucleotide sequence