Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS16875

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
4,280,328	+		ABI39_RS16870	0.46	-0.0
4,280,395	+		ABI39_RS16870	0.51	-1.6
4,280,479	+		ABI39_RS16870	0.57	-1.6
4,280,600	+		ABI39_RS16870	0.66	-2.4
4,280,600	+		ABI39_RS16870	0.66	-1.8
4,280,679	+		ABI39_RS16870	0.72	-2.7
4,280,890	+		ABI39_RS16870	0.88	-2.0
4,280,896	+		ABI39_RS16870	0.88	-1.4
4,280,935	+				+0.2
4,281,012	+				-2.4
4,281,050	+				-0.8
4,281,054	+				+1.0
4,281,301	-		ABI39_RS16875	0.18	-2.3
4,281,367	-		ABI39_RS16875	0.24	+0.2
4,281,396	-		ABI39_RS16875	0.26	-0.4
4,281,406	-		ABI39_RS16875	0.27	-2.4
4,281,590	+		ABI39_RS16875	0.42	-2.1
4,281,596	+		ABI39_RS16875	0.43	-1.5
4,281,715	+		ABI39_RS16875	0.52	+1.8
4,282,113	+		ABI39_RS16875	0.85	-2.1
4,282,114	-		ABI39_RS16875	0.85	-0.8
4,282,144	+		ABI39_RS16875	0.88	-1.4
4,282,232	+				-2.1
4,282,280	+				-0.4
4,282,281	-				-0.8
4,282,287	+				-0.5
4,282,315	-				-1.4
4,282,317	+				-1.6
4,282,317	+				+1.2
4,282,318	-				-1.4
4,282,324	+				+0.2
4,282,324	+				-1.6
4,282,325	-				-1.6
4,282,326	+				+0.2
4,282,326	+				-0.4
4,282,329	+				-2.0
4,282,410	+		ABI39_RS16880	0.16	-1.4
4,282,410	+		ABI39_RS16880	0.16	+0.6
4,282,411	-		ABI39_RS16880	0.16	-1.1
4,282,411	-		ABI39_RS16880	0.16	-1.6
4,282,411	-		ABI39_RS16880	0.16	-0.8
4,282,462	+		ABI39_RS16880	0.24	-2.3
4,282,571	-		ABI39_RS16880	0.40	-2.0
4,282,619	+		ABI39_RS16880	0.47	-1.4
4,282,636	+		ABI39_RS16880	0.49	-0.8
4,282,637	-		ABI39_RS16880	0.49	-2.1
4,282,715	+		ABI39_RS16880	0.61	+0.2
4,282,779	+		ABI39_RS16880	0.71	-1.4
4,282,919	+				+0.2
4,282,932	+				+1.2
4,282,951	+				-0.4
4,282,951	+				-2.1
4,282,975	+				-0.9
4,283,208	+		ABI39_RS16885	0.33	-0.8