Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS15380

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
3,981,424	-		ABI39_RS15375	0.26	-2.5
3,981,424	-		ABI39_RS15375	0.26	-2.0
3,981,428	-		ABI39_RS15375	0.26	-3.3
3,981,428	-		ABI39_RS15375	0.26	-2.4
3,981,430	+		ABI39_RS15375	0.26	-2.3
3,981,467	+		ABI39_RS15375	0.30	-2.3
3,981,568	-		ABI39_RS15375	0.40	-2.2
3,981,642	+		ABI39_RS15375	0.47	-2.7
3,981,702	+		ABI39_RS15375	0.53	-3.4
3,981,728	+		ABI39_RS15375	0.55	-1.3
3,981,728	+		ABI39_RS15375	0.55	-2.4
3,981,729	-		ABI39_RS15375	0.55	-2.5
3,981,729	-		ABI39_RS15375	0.55	-2.2
3,981,729	-		ABI39_RS15375	0.55	-4.1
3,981,734	+		ABI39_RS15375	0.56	-3.0
3,981,739	-		ABI39_RS15375	0.56	-2.6
3,981,740	+		ABI39_RS15375	0.56	-3.2
3,981,868	+		ABI39_RS15375	0.69	-3.7
3,981,868	+		ABI39_RS15375	0.69	-2.3
3,981,872	+		ABI39_RS15375	0.69	-3.2
3,981,925	-		ABI39_RS15375	0.74	-2.8
3,981,965	-		ABI39_RS15375	0.78	-3.1
3,981,992	+		ABI39_RS15375	0.81	-1.1
3,982,183	+				+0.6
3,982,246	-				-1.6
3,982,251	+				+0.4
3,982,296	-				-2.6
3,982,362	+				-2.0
3,982,486	-		ABI39_RS15380	0.28	-3.9
3,982,690	+		ABI39_RS15380	0.58	-0.8
3,982,690	+		ABI39_RS15380	0.58	-4.7
3,982,912	+				-2.5
3,983,040	+				+0.3
3,983,041	-				-0.1
3,983,129	+				-0.1
3,983,375	+		ABI39_RS15385	0.18	+0.4
3,983,376	-		ABI39_RS15385	0.18	-0.2
3,983,380	-		ABI39_RS15385	0.19	+0.0
3,983,380	-		ABI39_RS15385	0.19	+0.4
3,983,380	-		ABI39_RS15385	0.19	+0.4
3,983,405	-		ABI39_RS15385	0.22	+0.6
3,983,438	+		ABI39_RS15385	0.26	+0.8
3,983,510	+		ABI39_RS15385	0.35	+0.4
3,983,510	+		ABI39_RS15385	0.35	-0.6
3,983,514	-		ABI39_RS15385	0.35	+0.3
3,983,514	-		ABI39_RS15385	0.35	-0.2
3,983,613	+		ABI39_RS15385	0.47	-0.1
3,983,698	+		ABI39_RS15385	0.58	+0.3
3,983,698	+		ABI39_RS15385	0.58	+0.8
3,983,699	-		ABI39_RS15385	0.58	-0.1
3,983,699	-		ABI39_RS15385	0.58	-0.3
3,983,780	+		ABI39_RS15385	0.68	-0.1
3,983,780	+		ABI39_RS15385	0.68	+0.2
3,983,842	+		ABI39_RS15385	0.75	+0.5
3,983,843	-		ABI39_RS15385	0.75	+0.1
3,983,966	-				-0.3