Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS10505

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
2,806,044	+		ABI39_RS10500	0.15	-1.0
2,806,328	-		ABI39_RS10500	0.41	-1.8
2,806,563	+		ABI39_RS10500	0.63	-2.6
2,806,564	-		ABI39_RS10500	0.63	-1.4
2,806,674	-		ABI39_RS10500	0.74	-3.2
2,806,709	+		ABI39_RS10500	0.77	-3.4
2,806,709	+		ABI39_RS10500	0.77	-4.4
2,806,709	+		ABI39_RS10500	0.77	-1.6
2,806,710	-		ABI39_RS10500	0.77	-1.7
2,806,756	+		ABI39_RS10500	0.81	-2.1
2,806,851	+				-1.8
2,806,858	-				-2.5
2,806,949	-				-3.7
2,807,046	-				-3.1
2,807,050	-				-3.9
2,807,173	+		ABI39_RS10505	0.17	-2.8
2,807,173	+		ABI39_RS10505	0.17	-3.0
2,807,174	-		ABI39_RS10505	0.17	-3.7
2,807,174	-		ABI39_RS10505	0.17	-4.9
2,807,249	+		ABI39_RS10505	0.23	-3.0
2,807,249	+		ABI39_RS10505	0.23	-4.5
2,807,250	-		ABI39_RS10505	0.23	-5.2
2,807,293	-		ABI39_RS10505	0.27	-5.0
2,807,345	-		ABI39_RS10505	0.31	-2.7
2,807,539	+		ABI39_RS10505	0.48	-3.6
2,807,629	+		ABI39_RS10505	0.55	-1.6
2,807,749	-		ABI39_RS10505	0.65	-5.5
2,807,749	-		ABI39_RS10505	0.65	-3.6
2,807,777	+		ABI39_RS10505	0.68	-2.9
2,807,778	-		ABI39_RS10505	0.68	-5.4
2,807,881	-		ABI39_RS10505	0.76	-4.5
2,808,133	+				-3.8
2,808,136	+				-2.3
2,808,161	-				-4.9
2,808,176	+				-0.3
2,808,226	-		ABI39_RS10510	0.11	-3.3
2,808,262	+		ABI39_RS10510	0.15	-4.5
2,808,279	+		ABI39_RS10510	0.17	-4.2
2,808,415	-		ABI39_RS10510	0.33	-2.1
2,808,590	+		ABI39_RS10510	0.54	-2.3
2,808,613	-		ABI39_RS10510	0.57	-4.5
2,808,686	+		ABI39_RS10510	0.65	-4.4
2,808,686	+		ABI39_RS10510	0.65	-4.4
2,808,785	+		ABI39_RS10510	0.77	-2.9
2,808,786	-		ABI39_RS10510	0.77	-4.1
2,808,827	+		ABI39_RS10510	0.82	-2.6
2,808,828	-		ABI39_RS10510	0.82	-4.2
2,808,891	+		ABI39_RS10510	0.90	-3.8
2,808,940	+				-3.4
2,808,951	+				-4.6
2,808,960	+				-4.7
2,808,961	-				-5.0
2,808,993	-				-0.4
2,809,032	+				-2.9
2,809,035	+				-3.3
2,809,070	+				-4.4
2,809,071	-				-4.1
2,809,129	+				-4.8
2,809,134	+				-3.7
2,809,134	+				-3.3