Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS10100

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
2,696,807	+		ABI39_RS10090	0.79	-1.1
2,696,807	+		ABI39_RS10090	0.79	-1.1
2,696,807	+		ABI39_RS10090	0.79	-1.2
2,696,808	-		ABI39_RS10090	0.79	-0.5
2,696,808	-		ABI39_RS10090	0.79	+0.2
2,696,835	+		ABI39_RS10090	0.81	-0.5
2,696,836	-		ABI39_RS10090	0.81	-0.0
2,696,839	+		ABI39_RS10090	0.82	-2.0
2,696,931	+				+0.4
2,696,932	-				-0.4
2,697,035	+				-0.2
2,697,042	-				-0.5
2,697,064	+				-0.1
2,697,155	-		ABI39_RS10095	0.16	-0.8
2,697,164	-		ABI39_RS10095	0.17	-0.3
2,697,211	+		ABI39_RS10095	0.24	-1.5
2,697,246	-		ABI39_RS10095	0.29	+0.3
2,697,375	-		ABI39_RS10095	0.47	+0.6
2,697,416	+		ABI39_RS10095	0.53	-0.3
2,697,419	+		ABI39_RS10095	0.53	-1.7
2,697,420	-		ABI39_RS10095	0.53	+0.4
2,697,420	-		ABI39_RS10095	0.53	-0.5
2,697,472	-		ABI39_RS10095	0.61	+0.9
2,697,509	+		ABI39_RS10095	0.66	-1.1
2,697,531	+		ABI39_RS10095	0.69	-1.3
2,697,575	+		ABI39_RS10095	0.75	-1.9
2,697,597	-		ABI39_RS10095	0.78	+0.5
2,697,663	+		ABI39_RS10095	0.88	-2.9
2,697,664	-		ABI39_RS10095	0.88	-0.4
2,697,664	-		ABI39_RS10095	0.88	+0.4
2,697,731	-				+0.7
2,697,747	+				-2.9
2,698,772	-				+0.3
2,698,794	-				+1.9
2,698,796	-				-0.3
2,698,910	+		ABI39_RS10105	0.11	-1.8
2,698,940	-		ABI39_RS10105	0.15	-0.7
2,699,135	-		ABI39_RS10105	0.38	-1.5
2,699,586	+				-0.1
2,699,586	+				-0.5
2,699,587	-				-1.7
2,699,592	-				-0.2
2,699,607	-				-0.2
2,699,676	-				+0.1
2,699,684	-				-0.8
2,699,701	-				-0.2
2,699,701	-				-0.0