Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS07790

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
2,109,158	+		ABI39_RS07780	0.46	-0.1
2,109,169	+		ABI39_RS07780	0.47	-0.8
2,109,179	-		ABI39_RS07780	0.48	-1.1
2,109,232	+		ABI39_RS07780	0.54	+0.2
2,109,233	-		ABI39_RS07780	0.54	-0.6
2,109,255	+		ABI39_RS07780	0.57	+0.6
2,109,293	+		ABI39_RS07780	0.62	-0.1
2,109,355	+		ABI39_RS07780	0.69	-0.0
2,109,373	-		ABI39_RS07780	0.71	+0.2
2,109,373	-		ABI39_RS07780	0.71	-0.0
2,109,379	+		ABI39_RS07780	0.72	-0.3
2,109,434	-		ABI39_RS07780	0.78	-0.1
2,109,487	+		ABI39_RS07780	0.85	-0.1
2,109,488	-		ABI39_RS07780	0.85	-0.3
2,109,562	-				+0.1
2,109,615	-				-0.3
2,109,658	+				+0.4
2,109,667	-				-0.2
2,109,669	+				-0.8
2,109,726	+				-0.3
2,109,732	+				-0.7
2,109,763	+				+0.2
2,109,786	+				-0.8
2,109,787	-				+0.3
2,109,787	-				-0.2
2,109,795	+				-0.5
2,109,796	-				+0.5
2,109,796	-				+0.5
2,109,877	+		ABI39_RS23170	0.30	+0.1
2,109,878	-		ABI39_RS23170	0.30	-0.0
2,109,878	-		ABI39_RS23170	0.30	+0.0
2,109,901	+		ABI39_RS23170	0.36	-0.1
2,110,120	-				+0.4
2,110,170	-				-4.1
2,110,208	+				-5.3
2,110,209	-				-5.4
2,110,209	-				-4.5
2,110,613	+		ABI39_RS07790	0.45	-4.5
2,110,614	-		ABI39_RS07790	0.45	-2.3
2,110,618	-		ABI39_RS07790	0.45	-4.3
2,110,618	-		ABI39_RS07790	0.45	-4.7
2,110,829	+		ABI39_RS07790	0.65	-5.3
2,110,870	+		ABI39_RS07790	0.69	-4.7
2,110,880	-		ABI39_RS07790	0.70	-4.8
2,110,975	+		ABI39_RS07790	0.79	-6.6
2,111,091	-		ABI39_RS07790	0.89	-4.7
2,111,184	-				-3.6
2,111,220	-				-0.4
2,111,283	+				-0.1
2,111,422	-				+0.3
2,111,464	+				+0.1
2,111,464	+				-1.3
2,111,574	-				-1.0
2,111,579	+				+0.5
2,111,638	+		ABI39_RS07795	0.12	+0.1
2,111,691	+		ABI39_RS07795	0.15	-0.5
2,111,716	+		ABI39_RS07795	0.17	+0.3
2,111,716	+		ABI39_RS07795	0.17	-0.1
2,111,717	-		ABI39_RS07795	0.17	+0.4
2,111,717	-		ABI39_RS07795	0.17	-0.4
2,111,719	-		ABI39_RS07795	0.17	-0.8
2,111,738	+		ABI39_RS07795	0.18	-0.7
2,111,841	-		ABI39_RS07795	0.24	-1.7
2,111,934	+		ABI39_RS07795	0.29	-3.3
2,111,935	-		ABI39_RS07795	0.29	-0.3
2,111,974	+		ABI39_RS07795	0.31	+0.1
2,112,090	+		ABI39_RS07795	0.37	-0.4
2,112,159	+		ABI39_RS07795	0.41	-0.4
2,112,159	+		ABI39_RS07795	0.41	+0.1