Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS07715

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
2,089,948	+		ABI39_RS07710	0.74	-1.0
2,089,972	+		ABI39_RS07710	0.75	-0.7
2,089,973	-		ABI39_RS07710	0.75	-0.6
2,090,081	+		ABI39_RS07710	0.78	+0.3
2,090,082	-		ABI39_RS07710	0.78	-0.7
2,090,088	-		ABI39_RS07710	0.79	+0.4
2,090,133	-		ABI39_RS07710	0.80	-0.3
2,090,269	+		ABI39_RS07710	0.84	-0.5
2,090,477	-				-0.2
2,090,597	+				-0.8
2,090,610	-				-0.9
2,090,645	+				+0.9
2,090,753	+				-0.8
2,090,786	-				+0.3
2,090,795	-				+0.0
2,090,812	-				-0.5
2,090,824	-				-0.3
2,090,946	+				-0.6
2,090,952	+				-0.8
2,090,955	-				-0.8
2,090,981	+		ABI39_RS07715	0.11	-0.6
2,090,982	-		ABI39_RS07715	0.11	-0.2
2,090,987	+		ABI39_RS07715	0.11	-0.9
2,090,995	+		ABI39_RS07715	0.12	+0.1
2,091,056	+		ABI39_RS07715	0.15	-0.0
2,091,056	+		ABI39_RS07715	0.15	-0.5
2,091,123	+		ABI39_RS07715	0.20	+0.6
2,091,125	+		ABI39_RS07715	0.20	+0.2
2,091,290	-		ABI39_RS07715	0.30	-0.3
2,091,322	-		ABI39_RS07715	0.32	-1.2
2,091,346	+		ABI39_RS07715	0.33	-2.2
2,091,346	+		ABI39_RS07715	0.33	+0.2
2,091,348	+		ABI39_RS07715	0.33	-1.4
2,091,398	+		ABI39_RS07715	0.36	-0.4
2,091,401	-		ABI39_RS07715	0.36	-0.5
2,091,458	-		ABI39_RS07715	0.40	+0.1
2,091,494	-		ABI39_RS07715	0.42	-0.5
2,091,515	+		ABI39_RS07715	0.43	-0.5
2,091,565	-		ABI39_RS07715	0.46	-0.2
2,091,608	-		ABI39_RS07715	0.49	-0.0
2,091,658	+		ABI39_RS07715	0.52	-0.7
2,091,659	-		ABI39_RS07715	0.52	-0.6
2,091,686	-		ABI39_RS07715	0.54	-0.9
2,091,703	+		ABI39_RS07715	0.55	-0.0
2,092,101	-		ABI39_RS07715	0.79	+0.7
2,092,131	+		ABI39_RS07715	0.81	+0.6
2,092,263	+		ABI39_RS07715	0.89	-0.7
2,092,264	-		ABI39_RS07715	0.89	-0.5
2,092,334	-				+0.3
2,092,377	-				-0.7
2,092,425	-				+0.1
2,092,638	-				+0.5
2,092,658	-				-0.4
2,092,658	-				+0.7
2,092,671	+				-0.3
2,092,678	+				+0.0
2,092,683	+				+0.2
2,092,723	+				+0.1
2,092,761	-				-1.1
2,092,787	-				-1.9
2,092,787	-				+0.0
2,092,787	-				-0.8
2,092,795	+				+0.8
2,092,806	-				+0.3
2,092,841	+				+0.1
2,092,850	-				+0.4
2,092,926	-				-0.3
2,092,964	+				+0.1
2,093,133	+				+0.2
2,093,189	+				-0.3
2,093,253	-				+0.2
2,093,317	-				-0.3
2,093,321	+				+0.4
2,093,445	+		ABI39_RS07725	0.23	-0.6
2,093,446	-		ABI39_RS07725	0.24	-0.2