Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS05500

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
1,524,698	+		ABI39_RS05495	0.53	-0.2
1,524,709	-		ABI39_RS05495	0.53	+0.2
1,524,788	+		ABI39_RS05495	0.57	-0.0
1,524,804	-		ABI39_RS05495	0.58	-0.3
1,524,827	+		ABI39_RS05495	0.59	-0.3
1,524,853	-		ABI39_RS05495	0.60	+0.7
1,524,959	+		ABI39_RS05495	0.66	+0.1
1,524,960	-		ABI39_RS05495	0.66	-0.9
1,524,960	-		ABI39_RS05495	0.66	+0.6
1,525,019	+		ABI39_RS05495	0.69	+0.3
1,525,096	-		ABI39_RS05495	0.73	+0.2
1,525,119	-		ABI39_RS05495	0.74	-0.1
1,525,326	-		ABI39_RS05495	0.84	+0.2
1,525,594	+				-1.1
1,525,621	+				-0.5
1,525,686	+				-0.6
1,525,687	-				+0.6
1,525,697	+				-1.0
1,525,724	-				-0.0
1,526,116	+		ABI39_RS05500	0.16	-0.4
1,526,146	+		ABI39_RS05500	0.18	-0.8
1,526,185	-		ABI39_RS05500	0.19	+0.2
1,526,399	-		ABI39_RS05500	0.27	-0.3
1,526,506	-		ABI39_RS05500	0.31	-1.4
1,526,598	+		ABI39_RS05500	0.35	-0.0
1,526,598	+		ABI39_RS05500	0.35	+0.2
1,526,716	-		ABI39_RS05500	0.39	-0.9
1,526,795	-		ABI39_RS05500	0.42	+0.1
1,526,797	-		ABI39_RS05500	0.43	-0.1
1,526,897	-		ABI39_RS05500	0.46	+0.2
1,526,897	-		ABI39_RS05500	0.46	-0.6
1,526,897	-		ABI39_RS05500	0.46	+0.5
1,526,949	-		ABI39_RS05500	0.48	+0.0
1,526,954	-		ABI39_RS05500	0.49	-0.5
1,527,460	+		ABI39_RS05500	0.68	+0.1
1,527,522	-		ABI39_RS05500	0.70	+0.2
1,527,522	-		ABI39_RS05500	0.70	-0.5
1,527,538	+		ABI39_RS05500	0.71	-0.6
1,527,539	-		ABI39_RS05500	0.71	+0.4
1,527,539	-		ABI39_RS05500	0.71	-0.0
1,527,604	+		ABI39_RS05500	0.73	-0.4
1,527,614	-		ABI39_RS05500	0.74	+0.3
1,527,812	+		ABI39_RS05500	0.81	+0.4
1,527,814	+		ABI39_RS05500	0.81	-0.9
1,527,816	+		ABI39_RS05500	0.82	-0.9
1,527,860	-		ABI39_RS05500	0.83	-0.1
1,527,883	+		ABI39_RS05500	0.84	-0.5
1,528,001	-		ABI39_RS05500	0.89	-1.1
1,528,283	+				-0.9
1,528,594	-		ABI39_RS05505	0.35	+0.1
1,528,595	+		ABI39_RS05505	0.35	-0.3
1,528,595	+		ABI39_RS05505	0.35	-0.1
1,528,667	+		ABI39_RS05505	0.50	-0.0
1,528,672	+		ABI39_RS05505	0.50	+0.0
1,528,888	-				+0.2
1,528,945	+				-0.5
1,528,967	+				-0.6
1,529,271	-				+0.6