Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS04920 and ABI39_RS04925 are separated by 12 nucleotides ABI39_RS04925 and ABI39_RS04930 are separated by 273 nucleotides ABI39_RS04930 and ABI39_RS04935 are separated by 298 nucleotides ABI39_RS04935 and ABI39_RS04940 are separated by 28 nucleotides
ABI39_RS04920: ABI39_RS04920 - DUF2975 domain-containing protein, at 1,367,768 to 1,368,415
_RS04920
ABI39_RS04925: ABI39_RS04925 - DUF2975 domain-containing protein, at 1,368,428 to 1,369,063
_RS04925
ABI39_RS04930: ABI39_RS04930 - helix-turn-helix transcriptional regulator, at 1,369,337 to 1,369,549
_RS04930
ABI39_RS04935: ABI39_RS04935 - cation transporter, at 1,369,848 to 1,370,213
_RS04935
ABI39_RS04940: ABI39_RS04940 - TonB-dependent receptor, at 1,370,242 to 1,372,473
_RS04940
Position (kb) 1369
1370 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1368.405 kb on + strand at 1368.670 kb on + strand, within ABI39_RS04925 at 1368.671 kb on - strand, within ABI39_RS04925 at 1368.675 kb on + strand, within ABI39_RS04925 at 1368.713 kb on + strand, within ABI39_RS04925 at 1368.715 kb on + strand, within ABI39_RS04925 at 1368.716 kb on - strand, within ABI39_RS04925 at 1368.771 kb on - strand, within ABI39_RS04925 at 1368.818 kb on - strand, within ABI39_RS04925 at 1368.834 kb on + strand, within ABI39_RS04925 at 1368.840 kb on + strand, within ABI39_RS04925 at 1368.841 kb on - strand, within ABI39_RS04925 at 1368.916 kb on + strand, within ABI39_RS04925 at 1368.916 kb on + strand, within ABI39_RS04925 at 1368.956 kb on + strand, within ABI39_RS04925 at 1369.075 kb on + strand at 1369.091 kb on - strand at 1369.155 kb on + strand at 1369.156 kb on - strand at 1369.169 kb on + strand at 1369.216 kb on - strand at 1369.259 kb on - strand at 1369.347 kb on + strand at 1369.362 kb on + strand, within ABI39_RS04930 at 1369.486 kb on + strand, within ABI39_RS04930 at 1369.500 kb on + strand, within ABI39_RS04930 at 1369.501 kb on - strand, within ABI39_RS04930 at 1369.531 kb on + strand at 1369.553 kb on - strand at 1369.586 kb on - strand at 1369.676 kb on + strand at 1369.747 kb on - strand at 1369.837 kb on + strand at 1369.838 kb on - strand at 1369.838 kb on - strand at 1369.838 kb on - strand at 1369.922 kb on + strand, within ABI39_RS04935 at 1369.950 kb on - strand, within ABI39_RS04935 at 1369.950 kb on - strand, within ABI39_RS04935 at 1370.008 kb on + strand, within ABI39_RS04935 at 1370.012 kb on + strand, within ABI39_RS04935 at 1370.013 kb on - strand, within ABI39_RS04935 at 1370.015 kb on + strand, within ABI39_RS04935 at 1370.016 kb on - strand, within ABI39_RS04935 at 1370.055 kb on + strand, within ABI39_RS04935 at 1370.276 kb on + strand at 1370.280 kb on - strand at 1370.371 kb on - strand at 1370.467 kb on - strand, within ABI39_RS04940 at 1370.496 kb on + strand, within ABI39_RS04940 at 1370.497 kb on - strand, within ABI39_RS04940
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 1,368,405 + -0.4 1,368,670 + ABI39_RS04925 0.38 -0.2 1,368,671 - ABI39_RS04925 0.38 -0.4 1,368,675 + ABI39_RS04925 0.39 -0.5 1,368,713 + ABI39_RS04925 0.45 +0.1 1,368,715 + ABI39_RS04925 0.45 +0.6 1,368,716 - ABI39_RS04925 0.45 -1.2 1,368,771 - ABI39_RS04925 0.54 -0.5 1,368,818 - ABI39_RS04925 0.61 -0.7 1,368,834 + ABI39_RS04925 0.64 -0.3 1,368,840 + ABI39_RS04925 0.65 -0.6 1,368,841 - ABI39_RS04925 0.65 -1.1 1,368,916 + ABI39_RS04925 0.77 +0.1 1,368,916 + ABI39_RS04925 0.77 -1.0 1,368,956 + ABI39_RS04925 0.83 -0.3 1,369,075 + +0.2 1,369,091 - -1.3 1,369,155 + -0.1 1,369,156 - -1.5 1,369,169 + -0.1 1,369,216 - -2.4 1,369,259 - -1.3 1,369,347 + -3.9 1,369,362 + ABI39_RS04930 0.12 -1.1 1,369,486 + ABI39_RS04930 0.70 -1.8 1,369,500 + ABI39_RS04930 0.77 -2.4 1,369,501 - ABI39_RS04930 0.77 -1.3 1,369,531 + +0.3 1,369,553 - -0.0 1,369,586 - -0.2 1,369,676 + -0.1 1,369,747 - +0.0 1,369,837 + +0.0 1,369,838 - +0.3 1,369,838 - -0.1 1,369,838 - +0.1 1,369,922 + ABI39_RS04935 0.20 -0.0 1,369,950 - ABI39_RS04935 0.28 -0.4 1,369,950 - ABI39_RS04935 0.28 -0.1 1,370,008 + ABI39_RS04935 0.44 -0.3 1,370,012 + ABI39_RS04935 0.45 +0.3 1,370,013 - ABI39_RS04935 0.45 +0.5 1,370,015 + ABI39_RS04935 0.46 -1.0 1,370,016 - ABI39_RS04935 0.46 +0.6 1,370,055 + ABI39_RS04935 0.57 -0.1 1,370,276 + +0.1 1,370,280 - -0.2 1,370,371 - -0.8 1,370,467 - ABI39_RS04940 0.10 -0.1 1,370,496 + ABI39_RS04940 0.11 +0.5 1,370,497 - ABI39_RS04940 0.11 +0.3
Or see this region's nucleotide sequence