Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS04235 and ABI39_RS04240 are separated by 36 nucleotides ABI39_RS04240 and ABI39_RS04245 are separated by 126 nucleotides ABI39_RS04245 and ABI39_RS04250 are separated by 80 nucleotides
ABI39_RS04235: ABI39_RS04235 - phosphatase PAP2 family protein, at 1,195,381 to 1,196,037
_RS04235
ABI39_RS04240: ABI39_RS04240 - glycine cleavage system protein GcvH, at 1,196,074 to 1,196,454
_RS04240
ABI39_RS04245: ABI39_RS04245 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 1,196,581 to 1,197,090
_RS04245
ABI39_RS04250: ABI39_RS04250 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 1,197,171 to 1,199,015
_RS04250
Position (kb) 1196
1197
1198 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1195.699 kb on + strand, within ABI39_RS04235 at 1195.720 kb on - strand, within ABI39_RS04235 at 1195.723 kb on + strand, within ABI39_RS04235 at 1195.731 kb on - strand, within ABI39_RS04235 at 1195.744 kb on + strand, within ABI39_RS04235 at 1195.746 kb on + strand, within ABI39_RS04235 at 1195.747 kb on - strand, within ABI39_RS04235 at 1195.860 kb on - strand, within ABI39_RS04235 at 1195.860 kb on - strand, within ABI39_RS04235 at 1195.868 kb on - strand, within ABI39_RS04235 at 1195.877 kb on + strand, within ABI39_RS04235 at 1195.895 kb on + strand, within ABI39_RS04235 at 1195.895 kb on + strand, within ABI39_RS04235 at 1195.965 kb on + strand, within ABI39_RS04235 at 1195.965 kb on + strand, within ABI39_RS04235 at 1196.098 kb on + strand at 1196.138 kb on + strand, within ABI39_RS04240 at 1196.138 kb on + strand, within ABI39_RS04240 at 1196.433 kb on + strand at 1196.552 kb on + strand at 1196.601 kb on + strand at 1196.960 kb on + strand, within ABI39_RS04245 at 1197.109 kb on + strand at 1197.113 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 1,195,699 + ABI39_RS04235 0.48 +0.1 1,195,720 - ABI39_RS04235 0.52 -0.1 1,195,723 + ABI39_RS04235 0.52 -0.1 1,195,731 - ABI39_RS04235 0.53 +0.6 1,195,744 + ABI39_RS04235 0.55 -0.0 1,195,746 + ABI39_RS04235 0.56 +0.1 1,195,747 - ABI39_RS04235 0.56 +1.4 1,195,860 - ABI39_RS04235 0.73 -1.0 1,195,860 - ABI39_RS04235 0.73 -0.0 1,195,868 - ABI39_RS04235 0.74 +0.1 1,195,877 + ABI39_RS04235 0.75 -0.1 1,195,895 + ABI39_RS04235 0.78 +0.2 1,195,895 + ABI39_RS04235 0.78 -0.9 1,195,965 + ABI39_RS04235 0.89 +0.1 1,195,965 + ABI39_RS04235 0.89 -0.6 1,196,098 + +0.8 1,196,138 + ABI39_RS04240 0.17 -0.1 1,196,138 + ABI39_RS04240 0.17 +0.5 1,196,433 + -0.4 1,196,552 + -0.0 1,196,601 + -2.9 1,196,960 + ABI39_RS04245 0.74 -3.7 1,197,109 + +0.2 1,197,113 + +1.2
Or see this region's nucleotide sequence