Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02130 and ABI39_RS02135 are separated by 1 nucleotides ABI39_RS02135 and ABI39_RS02140 are separated by 31 nucleotides ABI39_RS02140 and ABI39_RS02145 are separated by 231 nucleotides ABI39_RS02145 and ABI39_RS02150 are separated by 102 nucleotides
ABI39_RS02130: ABI39_RS02130 - RNA pseudouridine synthase, at 624,747 to 625,418
_RS02130
ABI39_RS02135: ABI39_RS02135 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 625,420 to 626,166
_RS02135
ABI39_RS02140: ABI39_RS02140 - TetR/AcrR family transcriptional regulator, at 626,198 to 626,797
_RS02140
ABI39_RS02145: ABI39_RS02145 - tRNA-Met, at 627,029 to 627,101
_RS02145
ABI39_RS02150: ABI39_RS02150 - beta-galactosidase, at 627,204 to 629,882
_RS02150
Position (kb) 626
627 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 625.377 kb on - strand at 625.391 kb on + strand at 625.421 kb on + strand at 626.254 kb on - strand at 626.303 kb on - strand, within ABI39_RS02140 at 626.305 kb on - strand, within ABI39_RS02140 at 626.468 kb on - strand, within ABI39_RS02140 at 626.817 kb on - strand at 626.820 kb on + strand at 626.822 kb on + strand at 626.822 kb on + strand at 626.878 kb on + strand at 627.198 kb on - strand at 627.255 kb on + strand at 627.444 kb on + strand at 627.470 kb on + strand at 627.477 kb on + strand, within ABI39_RS02150 at 627.560 kb on + strand, within ABI39_RS02150 at 627.749 kb on + strand, within ABI39_RS02150 at 627.749 kb on + strand, within ABI39_RS02150 at 627.769 kb on - strand, within ABI39_RS02150 at 627.784 kb on + strand, within ABI39_RS02150
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 625,377 - -0.3 625,391 + -0.5 625,421 + -0.6 626,254 - -3.0 626,303 - ABI39_RS02140 0.17 -2.0 626,305 - ABI39_RS02140 0.18 -1.7 626,468 - ABI39_RS02140 0.45 -1.5 626,817 - -0.6 626,820 + -1.0 626,822 + -2.1 626,822 + -1.5 626,878 + +0.4 627,198 - -0.4 627,255 + +0.2 627,444 + -1.1 627,470 + +0.1 627,477 + ABI39_RS02150 0.10 -0.8 627,560 + ABI39_RS02150 0.13 -1.3 627,749 + ABI39_RS02150 0.20 +0.1 627,749 + ABI39_RS02150 0.20 -0.5 627,769 - ABI39_RS02150 0.21 +0.1 627,784 + ABI39_RS02150 0.22 -0.1
Or see this region's nucleotide sequence