Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01650 and ABI39_RS01655 are separated by 9 nucleotides ABI39_RS01655 and ABI39_RS01660 are separated by 324 nucleotides
ABI39_RS01650: ABI39_RS01650 - methylmalonyl-CoA mutase small subunit, at 494,400 to 496,310
_RS01650
ABI39_RS01655: ABI39_RS01655 - methylmalonyl-CoA mutase, at 496,320 to 498,470
_RS01655
ABI39_RS01660: ABI39_RS01660 - RagB/SusD family nutrient uptake outer membrane protein, at 498,795 to 500,285
_RS01660
Position (kb) 496
497
498
499 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 495.506 kb on + strand, within ABI39_RS01650 at 495.559 kb on + strand, within ABI39_RS01650 at 495.583 kb on - strand, within ABI39_RS01650 at 496.109 kb on + strand, within ABI39_RS01650 at 496.131 kb on + strand at 496.145 kb on + strand at 496.165 kb on + strand at 496.341 kb on - strand at 496.346 kb on + strand at 496.348 kb on + strand at 496.348 kb on + strand at 496.348 kb on + strand at 496.348 kb on + strand at 496.349 kb on - strand at 496.349 kb on - strand at 496.434 kb on - strand at 496.488 kb on + strand at 496.488 kb on + strand at 496.696 kb on + strand, within ABI39_RS01655 at 496.709 kb on - strand, within ABI39_RS01655 at 496.709 kb on - strand, within ABI39_RS01655 at 496.930 kb on - strand, within ABI39_RS01655 at 496.972 kb on + strand, within ABI39_RS01655 at 496.980 kb on + strand, within ABI39_RS01655 at 497.012 kb on + strand, within ABI39_RS01655 at 497.013 kb on - strand, within ABI39_RS01655 at 497.073 kb on + strand, within ABI39_RS01655 at 497.216 kb on + strand, within ABI39_RS01655 at 497.348 kb on + strand, within ABI39_RS01655 at 497.454 kb on - strand, within ABI39_RS01655 at 497.521 kb on - strand, within ABI39_RS01655 at 497.524 kb on - strand, within ABI39_RS01655 at 497.636 kb on + strand, within ABI39_RS01655 at 497.825 kb on - strand, within ABI39_RS01655 at 497.983 kb on + strand, within ABI39_RS01655 at 498.173 kb on + strand, within ABI39_RS01655 at 498.239 kb on - strand, within ABI39_RS01655 at 498.270 kb on - strand at 498.291 kb on - strand at 498.329 kb on - strand at 498.329 kb on - strand at 498.391 kb on + strand at 498.507 kb on - strand at 498.528 kb on + strand at 498.581 kb on + strand at 498.653 kb on + strand at 498.764 kb on + strand at 498.784 kb on - strand at 498.794 kb on - strand at 498.794 kb on - strand at 498.800 kb on - strand at 498.822 kb on - strand at 498.840 kb on - strand at 498.900 kb on + strand at 498.992 kb on + strand, within ABI39_RS01660 at 499.042 kb on + strand, within ABI39_RS01660 at 499.042 kb on + strand, within ABI39_RS01660 at 499.043 kb on - strand, within ABI39_RS01660 at 499.113 kb on + strand, within ABI39_RS01660 at 499.282 kb on - strand, within ABI39_RS01660 at 499.320 kb on + strand, within ABI39_RS01660 at 499.370 kb on + strand, within ABI39_RS01660 at 499.371 kb on - strand, within ABI39_RS01660 at 499.372 kb on + strand, within ABI39_RS01660 at 499.426 kb on + strand, within ABI39_RS01660 at 499.426 kb on + strand, within ABI39_RS01660
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 495,506 + ABI39_RS01650 0.58 -2.6 495,559 + ABI39_RS01650 0.61 -2.3 495,583 - ABI39_RS01650 0.62 -1.0 496,109 + ABI39_RS01650 0.89 -2.8 496,131 + -5.3 496,145 + -1.8 496,165 + -2.4 496,341 - -3.1 496,346 + -2.9 496,348 + -3.2 496,348 + -3.5 496,348 + -2.2 496,348 + -4.6 496,349 - -2.7 496,349 - -3.6 496,434 - -3.5 496,488 + -3.6 496,488 + -2.4 496,696 + ABI39_RS01655 0.17 -3.5 496,709 - ABI39_RS01655 0.18 -2.8 496,709 - ABI39_RS01655 0.18 -2.9 496,930 - ABI39_RS01655 0.28 -3.2 496,972 + ABI39_RS01655 0.30 -2.8 496,980 + ABI39_RS01655 0.31 -4.2 497,012 + ABI39_RS01655 0.32 -2.6 497,013 - ABI39_RS01655 0.32 -2.9 497,073 + ABI39_RS01655 0.35 -2.9 497,216 + ABI39_RS01655 0.42 -1.8 497,348 + ABI39_RS01655 0.48 -2.4 497,454 - ABI39_RS01655 0.53 -4.7 497,521 - ABI39_RS01655 0.56 -4.0 497,524 - ABI39_RS01655 0.56 -3.1 497,636 + ABI39_RS01655 0.61 -3.1 497,825 - ABI39_RS01655 0.70 -3.8 497,983 + ABI39_RS01655 0.77 -3.2 498,173 + ABI39_RS01655 0.86 -3.7 498,239 - ABI39_RS01655 0.89 -2.9 498,270 - -1.2 498,291 - -1.1 498,329 - -4.4 498,329 - -3.9 498,391 + -2.1 498,507 - -1.0 498,528 + -0.5 498,581 + +0.8 498,653 + +0.3 498,764 + +0.0 498,784 - -0.7 498,794 - +0.1 498,794 - -0.4 498,800 - +0.0 498,822 - -0.5 498,840 - -0.6 498,900 + +0.3 498,992 + ABI39_RS01660 0.13 +0.1 499,042 + ABI39_RS01660 0.17 -0.1 499,042 + ABI39_RS01660 0.17 +0.2 499,043 - ABI39_RS01660 0.17 +0.3 499,113 + ABI39_RS01660 0.21 -0.5 499,282 - ABI39_RS01660 0.33 +0.3 499,320 + ABI39_RS01660 0.35 -0.3 499,370 + ABI39_RS01660 0.39 +1.1 499,371 - ABI39_RS01660 0.39 -0.3 499,372 + ABI39_RS01660 0.39 -0.3 499,426 + ABI39_RS01660 0.42 -0.4 499,426 + ABI39_RS01660 0.42 -0.1
Or see this region's nucleotide sequence