Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01445 and ABI39_RS01450 are separated by 154 nucleotides ABI39_RS01450 and ABI39_RS01455 are separated by 143 nucleotides
ABI39_RS01445: ABI39_RS01445 - hypothetical protein, at 436,765 to 438,621
_RS01445
ABI39_RS01450: ABI39_RS01450 - DUF3244 domain-containing protein, at 438,776 to 439,180
_RS01450
ABI39_RS01455: ABI39_RS01455 - hypothetical protein, at 439,324 to 440,250
_RS01455
Position (kb) 438
439
440 Strain fitness (log2 ratio) -2
-1
0
1 at 437.786 kb on + strand, within ABI39_RS01445 at 438.177 kb on + strand, within ABI39_RS01445 at 438.180 kb on - strand, within ABI39_RS01445 at 438.261 kb on - strand, within ABI39_RS01445 at 438.282 kb on - strand, within ABI39_RS01445 at 438.282 kb on - strand, within ABI39_RS01445 at 438.312 kb on - strand, within ABI39_RS01445 at 438.338 kb on - strand, within ABI39_RS01445 at 438.383 kb on + strand, within ABI39_RS01445 at 438.453 kb on - strand at 438.453 kb on - strand at 438.453 kb on - strand at 438.570 kb on - strand at 438.711 kb on - strand at 438.770 kb on - strand at 438.790 kb on + strand at 438.813 kb on + strand at 438.817 kb on + strand, within ABI39_RS01450 at 438.818 kb on - strand, within ABI39_RS01450 at 438.818 kb on - strand, within ABI39_RS01450 at 438.838 kb on - strand, within ABI39_RS01450 at 438.841 kb on + strand, within ABI39_RS01450 at 438.862 kb on + strand, within ABI39_RS01450 at 439.046 kb on + strand, within ABI39_RS01450 at 439.126 kb on - strand, within ABI39_RS01450 at 439.131 kb on + strand, within ABI39_RS01450 at 439.163 kb on + strand at 439.274 kb on + strand at 439.318 kb on + strand at 439.319 kb on - strand at 439.418 kb on + strand, within ABI39_RS01455 at 439.418 kb on + strand, within ABI39_RS01455 at 439.419 kb on - strand, within ABI39_RS01455 at 439.421 kb on - strand, within ABI39_RS01455 at 439.425 kb on + strand, within ABI39_RS01455 at 439.425 kb on + strand, within ABI39_RS01455 at 439.426 kb on - strand, within ABI39_RS01455 at 439.426 kb on - strand, within ABI39_RS01455 at 439.426 kb on - strand, within ABI39_RS01455 at 439.426 kb on - strand, within ABI39_RS01455 at 439.450 kb on - strand, within ABI39_RS01455 at 439.462 kb on + strand, within ABI39_RS01455 at 439.463 kb on - strand, within ABI39_RS01455 at 439.535 kb on + strand, within ABI39_RS01455 at 439.589 kb on - strand, within ABI39_RS01455 at 439.655 kb on - strand, within ABI39_RS01455 at 439.731 kb on - strand, within ABI39_RS01455 at 439.753 kb on - strand, within ABI39_RS01455 at 439.819 kb on - strand, within ABI39_RS01455 at 440.057 kb on + strand, within ABI39_RS01455
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 437,786 + ABI39_RS01445 0.55 +0.2 438,177 + ABI39_RS01445 0.76 -0.6 438,180 - ABI39_RS01445 0.76 -0.2 438,261 - ABI39_RS01445 0.81 -0.0 438,282 - ABI39_RS01445 0.82 +0.3 438,282 - ABI39_RS01445 0.82 -0.2 438,312 - ABI39_RS01445 0.83 +0.7 438,338 - ABI39_RS01445 0.85 +0.1 438,383 + ABI39_RS01445 0.87 -0.6 438,453 - +0.7 438,453 - -0.0 438,453 - +0.7 438,570 - -0.4 438,711 - +0.3 438,770 - +0.2 438,790 + -0.4 438,813 + -0.3 438,817 + ABI39_RS01450 0.10 -0.4 438,818 - ABI39_RS01450 0.10 -0.2 438,818 - ABI39_RS01450 0.10 -1.2 438,838 - ABI39_RS01450 0.15 +0.6 438,841 + ABI39_RS01450 0.16 -1.2 438,862 + ABI39_RS01450 0.21 -0.8 439,046 + ABI39_RS01450 0.67 -1.3 439,126 - ABI39_RS01450 0.86 +0.6 439,131 + ABI39_RS01450 0.88 -1.2 439,163 + -1.7 439,274 + -1.3 439,318 + -0.5 439,319 - +0.4 439,418 + ABI39_RS01455 0.10 -1.7 439,418 + ABI39_RS01455 0.10 -0.4 439,419 - ABI39_RS01455 0.10 -0.1 439,421 - ABI39_RS01455 0.10 -0.3 439,425 + ABI39_RS01455 0.11 -0.8 439,425 + ABI39_RS01455 0.11 -0.7 439,426 - ABI39_RS01455 0.11 -1.0 439,426 - ABI39_RS01455 0.11 +0.0 439,426 - ABI39_RS01455 0.11 -0.2 439,426 - ABI39_RS01455 0.11 +0.8 439,450 - ABI39_RS01455 0.14 +0.7 439,462 + ABI39_RS01455 0.15 +0.1 439,463 - ABI39_RS01455 0.15 -0.2 439,535 + ABI39_RS01455 0.23 -1.7 439,589 - ABI39_RS01455 0.29 +0.4 439,655 - ABI39_RS01455 0.36 -1.2 439,731 - ABI39_RS01455 0.44 -0.7 439,753 - ABI39_RS01455 0.46 +0.1 439,819 - ABI39_RS01455 0.53 +0.4 440,057 + ABI39_RS01455 0.79 -2.2
Or see this region's nucleotide sequence