Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00515 and ABI39_RS00520 are separated by 51 nucleotides ABI39_RS00520 and ABI39_RS00525 are separated by 8 nucleotides ABI39_RS00525 and ABI39_RS00530 are separated by 177 nucleotides
ABI39_RS00515: ABI39_RS00515 - hypothetical protein, at 143,768 to 144,331
_RS00515
ABI39_RS00520: ABI39_RS00520 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 144,383 to 145,285
_RS00520
ABI39_RS00525: ABI39_RS00525 - alpha-L-fucosidase, at 145,294 to 147,333
_RS00525
ABI39_RS00530: ABI39_RS00530 - hypothetical protein, at 147,511 to 148,284
_RS00530
Position (kb) 145
146
147
148 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 144.376 kb on - strand at 144.499 kb on - strand, within ABI39_RS00520 at 144.563 kb on + strand, within ABI39_RS00520 at 144.580 kb on - strand, within ABI39_RS00520 at 144.666 kb on + strand, within ABI39_RS00520 at 144.692 kb on + strand, within ABI39_RS00520 at 144.693 kb on - strand, within ABI39_RS00520 at 144.693 kb on - strand, within ABI39_RS00520 at 144.693 kb on - strand, within ABI39_RS00520 at 144.696 kb on + strand, within ABI39_RS00520 at 144.697 kb on - strand, within ABI39_RS00520 at 144.697 kb on - strand, within ABI39_RS00520 at 144.718 kb on - strand, within ABI39_RS00520 at 144.763 kb on - strand, within ABI39_RS00520 at 144.868 kb on - strand, within ABI39_RS00520 at 144.960 kb on + strand, within ABI39_RS00520 at 145.097 kb on + strand, within ABI39_RS00520 at 145.263 kb on - strand at 145.283 kb on + strand at 145.288 kb on - strand at 145.420 kb on + strand at 145.662 kb on + strand, within ABI39_RS00525 at 145.662 kb on + strand, within ABI39_RS00525 at 145.663 kb on - strand, within ABI39_RS00525 at 145.764 kb on - strand, within ABI39_RS00525 at 145.786 kb on + strand, within ABI39_RS00525 at 145.804 kb on - strand, within ABI39_RS00525 at 145.804 kb on - strand, within ABI39_RS00525 at 145.804 kb on - strand, within ABI39_RS00525 at 146.003 kb on - strand, within ABI39_RS00525 at 146.168 kb on + strand, within ABI39_RS00525 at 146.293 kb on + strand, within ABI39_RS00525 at 146.294 kb on - strand, within ABI39_RS00525 at 146.299 kb on - strand, within ABI39_RS00525 at 146.448 kb on + strand, within ABI39_RS00525 at 146.559 kb on + strand, within ABI39_RS00525 at 146.560 kb on - strand, within ABI39_RS00525 at 146.581 kb on - strand, within ABI39_RS00525 at 146.685 kb on + strand, within ABI39_RS00525 at 146.738 kb on - strand, within ABI39_RS00525 at 146.781 kb on - strand, within ABI39_RS00525 at 146.937 kb on + strand, within ABI39_RS00525 at 146.969 kb on + strand, within ABI39_RS00525 at 146.991 kb on + strand, within ABI39_RS00525 at 147.005 kb on + strand, within ABI39_RS00525 at 147.146 kb on - strand at 147.344 kb on + strand at 147.348 kb on + strand at 147.427 kb on + strand at 147.474 kb on + strand at 147.485 kb on + strand at 147.636 kb on - strand, within ABI39_RS00530 at 147.740 kb on - strand, within ABI39_RS00530 at 147.774 kb on + strand, within ABI39_RS00530 at 147.964 kb on - strand, within ABI39_RS00530 at 147.969 kb on - strand, within ABI39_RS00530 at 147.993 kb on - strand, within ABI39_RS00530 at 148.128 kb on + strand, within ABI39_RS00530 at 148.235 kb on - strand at 148.292 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 144,376 - -1.5 144,499 - ABI39_RS00520 0.13 -2.2 144,563 + ABI39_RS00520 0.20 -2.1 144,580 - ABI39_RS00520 0.22 -1.4 144,666 + ABI39_RS00520 0.31 -2.1 144,692 + ABI39_RS00520 0.34 -1.2 144,693 - ABI39_RS00520 0.34 -1.5 144,693 - ABI39_RS00520 0.34 -3.8 144,693 - ABI39_RS00520 0.34 -1.5 144,696 + ABI39_RS00520 0.35 -2.2 144,697 - ABI39_RS00520 0.35 -0.8 144,697 - ABI39_RS00520 0.35 -1.9 144,718 - ABI39_RS00520 0.37 -1.8 144,763 - ABI39_RS00520 0.42 -1.5 144,868 - ABI39_RS00520 0.54 -2.1 144,960 + ABI39_RS00520 0.64 -2.1 145,097 + ABI39_RS00520 0.79 -1.1 145,263 - -1.6 145,283 + +0.7 145,288 - -1.1 145,420 + +0.2 145,662 + ABI39_RS00525 0.18 -0.3 145,662 + ABI39_RS00525 0.18 -0.7 145,663 - ABI39_RS00525 0.18 -0.5 145,764 - ABI39_RS00525 0.23 +0.5 145,786 + ABI39_RS00525 0.24 -0.3 145,804 - ABI39_RS00525 0.25 +0.2 145,804 - ABI39_RS00525 0.25 +0.8 145,804 - ABI39_RS00525 0.25 -1.0 146,003 - ABI39_RS00525 0.35 +0.5 146,168 + ABI39_RS00525 0.43 -0.4 146,293 + ABI39_RS00525 0.49 -0.0 146,294 - ABI39_RS00525 0.49 -0.3 146,299 - ABI39_RS00525 0.49 +0.5 146,448 + ABI39_RS00525 0.57 +0.1 146,559 + ABI39_RS00525 0.62 +0.1 146,560 - ABI39_RS00525 0.62 -0.4 146,581 - ABI39_RS00525 0.63 -0.2 146,685 + ABI39_RS00525 0.68 +0.5 146,738 - ABI39_RS00525 0.71 +0.8 146,781 - ABI39_RS00525 0.73 +0.3 146,937 + ABI39_RS00525 0.81 +0.4 146,969 + ABI39_RS00525 0.82 +0.1 146,991 + ABI39_RS00525 0.83 +0.4 147,005 + ABI39_RS00525 0.84 -0.2 147,146 - -0.1 147,344 + +0.3 147,348 + -0.5 147,427 + -0.2 147,474 + -0.1 147,485 + -0.5 147,636 - ABI39_RS00530 0.16 +0.5 147,740 - ABI39_RS00530 0.30 -0.1 147,774 + ABI39_RS00530 0.34 -0.3 147,964 - ABI39_RS00530 0.59 -0.2 147,969 - ABI39_RS00530 0.59 -0.4 147,993 - ABI39_RS00530 0.62 +0.4 148,128 + ABI39_RS00530 0.80 -0.5 148,235 - -0.8 148,292 + +0.8
Or see this region's nucleotide sequence