Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS21330

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
5,259,127	-		ABI39_RS21325	0.52	+1.2
5,259,127	-		ABI39_RS21325	0.52	+0.2
5,259,249	+		ABI39_RS21325	0.58	-0.2
5,259,250	-		ABI39_RS21325	0.58	-0.4
5,259,250	-		ABI39_RS21325	0.58	+1.2
5,259,250	-		ABI39_RS21325	0.58	-0.0
5,259,306	+		ABI39_RS21325	0.61	-0.4
5,259,365	+		ABI39_RS21325	0.64	-0.7
5,259,378	-		ABI39_RS21325	0.65	-0.6
5,259,454	+		ABI39_RS21325	0.69	-0.5
5,259,454	+		ABI39_RS21325	0.69	+1.1
5,259,455	-		ABI39_RS21325	0.69	+0.4
5,259,455	-		ABI39_RS21325	0.69	-1.4
5,259,477	-		ABI39_RS21325	0.70	+0.2
5,259,987	-				-0.8
5,260,035	+				-0.1
5,260,038	-				-0.5
5,260,055	+				-0.1
5,260,062	-				-0.3
5,260,192	-				-0.3
5,260,344	+		ABI39_RS21330	0.16	-0.5
5,260,382	+		ABI39_RS21330	0.18	-0.4
5,260,399	-		ABI39_RS21330	0.19	-0.9
5,260,441	-		ABI39_RS21330	0.21	+0.1
5,260,595	-		ABI39_RS21330	0.31	-1.3
5,260,595	-		ABI39_RS21330	0.31	+0.3
5,260,633	+		ABI39_RS21330	0.33	-0.2
5,260,634	-		ABI39_RS21330	0.33	-0.4
5,260,634	-		ABI39_RS21330	0.33	+0.5
5,260,667	+		ABI39_RS21330	0.35	-0.1
5,260,668	-		ABI39_RS21330	0.35	-0.7
5,260,732	-		ABI39_RS21330	0.39	+0.4
5,260,903	-		ABI39_RS21330	0.50	-0.6
5,261,057	+		ABI39_RS21330	0.59	+0.7
5,261,065	-		ABI39_RS21330	0.59	+0.0
5,261,071	+		ABI39_RS21330	0.60	-1.0
5,261,072	-		ABI39_RS21330	0.60	-0.2
5,261,073	+		ABI39_RS21330	0.60	-0.3
5,261,118	-		ABI39_RS21330	0.63	-0.3
5,261,299	+		ABI39_RS21330	0.74	-1.5
5,261,340	-		ABI39_RS21330	0.76	-0.7
5,261,361	+		ABI39_RS21330	0.78	-0.2
5,261,420	+		ABI39_RS21330	0.81	+0.3
5,261,423	+		ABI39_RS21330	0.81	-0.9
5,261,429	+		ABI39_RS21330	0.82	-0.3
5,261,431	+		ABI39_RS21330	0.82	+0.5
5,261,432	-		ABI39_RS21330	0.82	-0.5
5,261,432	-		ABI39_RS21330	0.82	-0.5
5,261,518	-		ABI39_RS21330	0.87	-0.5
5,261,582	+				-0.5
5,261,703	+				-0.4
5,261,894	+				-0.8
5,261,951	+				-0.1
5,262,055	+		ABI39_RS21335	0.13	-0.1
5,262,206	+		ABI39_RS21335	0.23	-0.4
5,262,207	-		ABI39_RS21335	0.23	-0.6
5,262,213	-		ABI39_RS21335	0.23	-0.6
5,262,310	+		ABI39_RS21335	0.30	-0.9
5,262,315	-		ABI39_RS21335	0.30	+1.2
5,262,315	-		ABI39_RS21335	0.30	-0.1
5,262,319	-		ABI39_RS21335	0.30	-0.6
5,262,319	-		ABI39_RS21335	0.30	+0.1
5,262,426	-		ABI39_RS21335	0.38	-1.7
5,262,467	-		ABI39_RS21335	0.40	-0.5
5,262,492	-		ABI39_RS21335	0.42	-0.4
5,262,560	+		ABI39_RS21335	0.46	-0.6
5,262,569	-		ABI39_RS21335	0.47	-0.5
5,262,569	-		ABI39_RS21335	0.47	-0.3
5,262,623	+		ABI39_RS21335	0.51	+0.3
5,262,703	-		ABI39_RS21335	0.56	+0.6