Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS19015

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
4,784,958	+		ABI39_RS19005	0.90	+0.3
4,785,070	-				+0.6
4,785,092	+				+0.1
4,785,162	-				+0.0
4,785,199	+				+0.3
4,785,199	+				-0.9
4,785,200	-				+0.7
4,785,266	+				-0.7
4,785,388	-				+0.3
4,785,394	+				-0.7
4,785,473	-				-0.3
4,785,480	-				+0.8
4,785,491	-				+0.4
4,785,548	-		ABI39_RS19010	0.19	+1.0
4,785,617	-		ABI39_RS19010	0.37	-0.1
4,785,668	+		ABI39_RS19010	0.51	-0.1
4,785,914	+				-0.1
4,786,286	+		ABI39_RS19015	0.48	-0.8
4,786,287	-		ABI39_RS19015	0.48	+1.0
4,786,302	-		ABI39_RS19015	0.50	-0.0
4,786,359	-		ABI39_RS19015	0.58	+0.7
4,786,376	+		ABI39_RS19015	0.60	+1.2
4,786,381	-		ABI39_RS19015	0.61	+1.0
4,786,493	+		ABI39_RS19015	0.76	-0.2
4,786,577	-		ABI39_RS19015	0.87	+0.8
4,786,692	+				-1.8
4,786,696	+				-0.7
4,786,696	+				-1.8
4,786,801	-				+0.1
4,786,827	+				-2.6
4,787,041	+				+1.5
4,787,041	+				+1.3
4,787,042	-				+0.7
4,787,064	-				+1.5
4,787,195	+				+1.3
4,787,195	+				+2.8
4,787,214	-				+1.3
4,787,323	+				+1.6
4,787,364	+				+1.2
4,787,373	-		ABI39_RS19020	0.10	+1.3
4,787,373	-		ABI39_RS19020	0.10	+1.1
4,787,429	+		ABI39_RS19020	0.11	+1.7
4,787,483	+		ABI39_RS19020	0.13	+1.4
4,787,615	+		ABI39_RS19020	0.16	+1.2
4,787,616	-		ABI39_RS19020	0.16	+1.5
4,787,621	+		ABI39_RS19020	0.16	+1.4
4,787,642	+		ABI39_RS19020	0.17	+2.6
4,787,643	-		ABI39_RS19020	0.17	+1.2