Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS19010

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
4,784,486	+		ABI39_RS19005	0.72	+0.2
4,784,607	+		ABI39_RS19005	0.76	-0.8
4,784,614	-		ABI39_RS19005	0.77	+0.4
4,784,636	+		ABI39_RS19005	0.77	-1.5
4,784,712	+		ABI39_RS19005	0.80	-1.4
4,784,727	-		ABI39_RS19005	0.81	+0.7
4,784,761	-		ABI39_RS19005	0.82	+0.2
4,784,761	-		ABI39_RS19005	0.82	+0.2
4,784,761	-		ABI39_RS19005	0.82	+0.6
4,784,801	-		ABI39_RS19005	0.84	+0.4
4,784,801	-		ABI39_RS19005	0.84	+0.7
4,784,805	-		ABI39_RS19005	0.84	+0.5
4,784,830	-		ABI39_RS19005	0.85	+0.1
4,784,843	-		ABI39_RS19005	0.85	+0.6
4,784,858	+		ABI39_RS19005	0.86	+0.0
4,784,863	-		ABI39_RS19005	0.86	+0.6
4,784,863	-		ABI39_RS19005	0.86	+0.3
4,784,904	+		ABI39_RS19005	0.88	-1.0
4,784,905	-		ABI39_RS19005	0.88	+0.8
4,784,958	+		ABI39_RS19005	0.90	+0.3
4,785,070	-				+0.6
4,785,092	+				+0.1
4,785,162	-				+0.0
4,785,199	+				+0.3
4,785,199	+				-0.9
4,785,200	-				+0.7
4,785,266	+				-0.7
4,785,388	-				+0.3
4,785,394	+				-0.7
4,785,473	-				-0.3
4,785,480	-				+0.8
4,785,491	-				+0.4
4,785,548	-		ABI39_RS19010	0.19	+1.0
4,785,617	-		ABI39_RS19010	0.37	-0.1
4,785,668	+		ABI39_RS19010	0.51	-0.1
4,785,914	+				-0.1
4,786,286	+		ABI39_RS19015	0.48	-0.8
4,786,287	-		ABI39_RS19015	0.48	+1.0
4,786,302	-		ABI39_RS19015	0.50	-0.0
4,786,359	-		ABI39_RS19015	0.58	+0.7
4,786,376	+		ABI39_RS19015	0.60	+1.2
4,786,381	-		ABI39_RS19015	0.61	+1.0
4,786,493	+		ABI39_RS19015	0.76	-0.2
4,786,577	-		ABI39_RS19015	0.87	+0.8
4,786,692	+				-1.8
4,786,696	+				-0.7
4,786,696	+				-1.8
4,786,801	-				+0.1
4,786,827	+				-2.6