Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS15970

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
4,091,200	-		ABI39_RS15950	0.87	-1.0
4,091,280	-				-0.4
4,091,280	-				-0.6
4,091,480	-		ABI39_RS15955	0.71	+0.0
4,091,480	-		ABI39_RS15955	0.71	+0.3
4,091,487	+		ABI39_RS15955	0.73	-0.5
4,091,600	-				-1.2
4,091,738	-		ABI39_RS15960	0.52	-0.1
4,091,747	+		ABI39_RS15960	0.54	+1.8
4,091,752	-		ABI39_RS15960	0.56	-0.2
4,091,752	-		ABI39_RS15960	0.56	+0.6
4,091,825	-		ABI39_RS15960	0.78	+0.5
4,091,884	+				+0.5
4,091,988	-		ABI39_RS15965	0.33	-0.2
4,092,078	-		ABI39_RS15965	0.61	+0.2
4,092,215	+				-0.3
4,092,216	-				+0.4
4,092,441	+		ABI39_RS15970	0.62	-0.8
4,092,498	+		ABI39_RS15970	0.76	+0.1
4,092,545	-		ABI39_RS15970	0.88	-0.2
4,092,573	-				-0.0
4,092,590	-				-0.1
4,092,590	-				-0.8
4,093,001	+		ABI39_RS15975	0.72	-0.4
4,093,001	+		ABI39_RS15975	0.72	-0.4
4,093,002	-		ABI39_RS15975	0.72	+0.7
4,093,122	+				+0.5
4,093,123	-				+0.1
4,093,141	-				+0.1
4,093,143	+				-0.6
4,093,304	-		ABI39_RS15980	0.19	+0.5
4,093,308	+		ABI39_RS15980	0.20	-0.2
4,093,388	+		ABI39_RS15980	0.41	+0.4
4,093,389	-		ABI39_RS15980	0.41	+0.1