Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS14425

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
3,741,462	+				-0.3
3,741,472	-				-0.5
3,741,630	+		ABI39_RS14420	0.23	+0.3
3,741,631	-		ABI39_RS14420	0.24	-0.5
3,741,688	-		ABI39_RS14420	0.33	+0.8
3,741,712	+		ABI39_RS14420	0.37	+0.3
3,741,727	-		ABI39_RS14420	0.39	-0.3
3,741,793	-		ABI39_RS14420	0.50	+0.7
3,742,014	-		ABI39_RS14420	0.86	-0.6
3,742,014	-		ABI39_RS14420	0.86	-0.7
3,742,019	+		ABI39_RS14420	0.87	-0.8
3,742,041	+				-0.3
3,742,045	+				+0.4
3,742,074	-				-0.1
3,742,094	+				-0.6
3,742,100	-				-1.2
3,742,109	+				-0.5
3,742,135	+				+0.1
3,742,183	+				+1.2
3,742,183	+				-0.3
3,742,194	+				+0.4
3,742,197	-				+0.6
3,742,440	-				-0.8
3,742,476	+				-0.7
3,742,623	-		ABI39_RS14425	0.29	-0.5
3,742,623	-		ABI39_RS14425	0.29	-0.4
3,742,625	-		ABI39_RS14425	0.29	-0.7
3,742,664	+		ABI39_RS14425	0.34	-1.5
3,742,668	+		ABI39_RS14425	0.35	-0.3
3,742,669	-		ABI39_RS14425	0.35	-0.4
3,742,720	+		ABI39_RS14425	0.42	-0.4
3,742,722	+		ABI39_RS14425	0.42	-0.4
3,742,723	-		ABI39_RS14425	0.42	-1.8
3,742,723	-		ABI39_RS14425	0.42	-0.6
3,742,728	-		ABI39_RS14425	0.43	-0.7
3,742,787	+		ABI39_RS14425	0.51	-0.7
3,742,853	+		ABI39_RS14425	0.60	-0.4
3,742,854	-		ABI39_RS14425	0.60	+0.2
3,742,864	-		ABI39_RS14425	0.61	-0.6
3,742,897	+		ABI39_RS14425	0.66	-1.1
3,743,037	+		ABI39_RS14425	0.85	-0.1
3,743,290	+		ABI39_RS14430	0.10	-1.6
3,743,305	+		ABI39_RS14430	0.12	+0.1
3,743,310	+		ABI39_RS14430	0.12	-0.5
3,743,311	-		ABI39_RS14430	0.12	-0.4
3,743,314	+		ABI39_RS14430	0.12	-0.7
3,743,368	+		ABI39_RS14430	0.16	-0.5
3,743,414	-		ABI39_RS14430	0.20	-0.5
3,743,414	-		ABI39_RS14430	0.20	-0.4
3,743,592	+		ABI39_RS14430	0.33	+0.2
3,743,626	-		ABI39_RS14430	0.35	+0.1
3,743,677	+		ABI39_RS14430	0.39	+0.6
3,743,678	-		ABI39_RS14430	0.39	-0.2
3,743,681	+		ABI39_RS14430	0.39	-0.8
3,743,682	-		ABI39_RS14430	0.39	-0.7
3,743,723	-		ABI39_RS14430	0.42	-1.1
3,743,792	-		ABI39_RS14430	0.47	-2.0
3,743,819	-		ABI39_RS14430	0.49	-0.9
3,743,939	-		ABI39_RS14430	0.58	-1.7
3,743,944	+		ABI39_RS14430	0.58	-0.0
3,743,944	+		ABI39_RS14430	0.58	-0.9
3,743,945	-		ABI39_RS14430	0.58	+0.0
3,744,013	+		ABI39_RS14430	0.63	-0.4
3,744,055	+		ABI39_RS14430	0.66	-0.1
3,744,056	-		ABI39_RS14430	0.66	-0.6
3,744,080	-		ABI39_RS14430	0.68	-1.9
3,744,093	-		ABI39_RS14430	0.69	-0.6
3,744,094	+		ABI39_RS14430	0.69	-0.1
3,744,095	-		ABI39_RS14430	0.69	-1.1
3,744,095	-		ABI39_RS14430	0.69	-0.9