Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS06565

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
1,814,938	-		ABI39_RS06560	0.53	-2.0
1,815,055	-		ABI39_RS06560	0.59	-2.4
1,815,122	-		ABI39_RS06560	0.62	-1.4
1,815,304	-		ABI39_RS06560	0.72	-1.0
1,815,309	+		ABI39_RS06560	0.72	-2.1
1,815,312	+		ABI39_RS06560	0.73	-2.6
1,815,312	+		ABI39_RS06560	0.73	-1.8
1,815,400	+		ABI39_RS06560	0.77	-2.3
1,815,403	-		ABI39_RS06560	0.77	-1.4
1,815,516	+		ABI39_RS06560	0.83	-0.1
1,815,531	+		ABI39_RS06560	0.84	-1.5
1,815,531	+		ABI39_RS06560	0.84	-1.7
1,815,532	-		ABI39_RS06560	0.84	-1.0
1,815,532	-		ABI39_RS06560	0.84	-2.6
1,815,729	-				-1.0
1,815,742	-				-2.0
1,815,749	+				-2.0
1,815,749	+				-2.2
1,815,819	-				-2.2
1,816,066	+				-2.8
1,816,265	-		ABI39_RS06565	0.20	-0.4
1,816,531	+		ABI39_RS06565	0.35	-1.9
1,816,531	+		ABI39_RS06565	0.35	-1.6
1,816,612	+		ABI39_RS06565	0.40	-1.8
1,816,613	-		ABI39_RS06565	0.40	-0.6
1,816,625	+		ABI39_RS06565	0.40	-2.5
1,816,631	+		ABI39_RS06565	0.41	-1.2
1,816,736	-		ABI39_RS06565	0.46	-1.1
1,816,949	+		ABI39_RS06565	0.58	-1.4
1,816,950	-		ABI39_RS06565	0.59	-1.3
1,816,950	-		ABI39_RS06565	0.59	-0.8
1,816,994	-		ABI39_RS06565	0.61	-1.4
1,817,008	-		ABI39_RS06565	0.62	-1.5
1,817,043	+		ABI39_RS06565	0.64	-2.6
1,817,044	-		ABI39_RS06565	0.64	-2.7
1,817,225	-		ABI39_RS06565	0.74	-1.4
1,817,258	+		ABI39_RS06565	0.76	-2.0
1,817,366	-		ABI39_RS06565	0.82	-1.0
1,817,368	+		ABI39_RS06565	0.82	-1.8
1,817,441	-		ABI39_RS06565	0.86	-0.3
1,817,494	+		ABI39_RS06565	0.89	-1.9
1,817,593	-				+0.7
1,817,600	-				-1.0
1,817,600	-				-1.3
1,817,662	+				-2.2
1,817,701	-				-0.2
1,817,768	+				-1.2
1,817,866	+				-2.7
1,817,867	-				-2.2
1,818,283	+		ABI39_RS06570	0.33	-1.7
1,818,377	+		ABI39_RS06570	0.38	-1.6
1,818,384	+		ABI39_RS06570	0.38	-2.9
1,818,384	+		ABI39_RS06570	0.38	-0.6
1,818,385	-		ABI39_RS06570	0.38	-1.9
1,818,470	+		ABI39_RS06570	0.43	-0.8
1,818,494	-		ABI39_RS06570	0.45	-1.7