Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS06340

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
1,756,067	-		ABI39_RS06335	0.40	+0.3
1,756,133	+		ABI39_RS06335	0.44	-0.0
1,756,134	-		ABI39_RS06335	0.44	+0.3
1,756,175	-		ABI39_RS06335	0.47	-0.3
1,756,175	-		ABI39_RS06335	0.47	-0.1
1,756,180	-		ABI39_RS06335	0.47	+0.1
1,756,237	+		ABI39_RS06335	0.51	-0.7
1,756,238	-		ABI39_RS06335	0.51	-0.1
1,756,242	-		ABI39_RS06335	0.51	-0.1
1,756,319	+		ABI39_RS06335	0.56	-0.7
1,756,320	-		ABI39_RS06335	0.56	+0.5
1,756,321	+		ABI39_RS06335	0.56	+0.5
1,756,336	-		ABI39_RS06335	0.57	+0.5
1,756,414	-		ABI39_RS06335	0.62	+0.2
1,756,495	+		ABI39_RS06335	0.67	-0.5
1,757,019	-				+0.7
1,757,020	+				-0.2
1,757,037	-				+0.4
1,757,113	+				+0.3
1,757,113	+				-0.2
1,757,120	-				-0.2
1,757,123	+				+0.5
1,757,184	-				+0.4
1,757,448	-		ABI39_RS06340	0.20	-0.0
1,757,705	-		ABI39_RS06340	0.33	+0.2
1,757,790	+		ABI39_RS06340	0.37	-0.0
1,757,800	-		ABI39_RS06340	0.37	+0.8
1,757,836	+		ABI39_RS06340	0.39	-0.2
1,757,837	-		ABI39_RS06340	0.39	-0.1
1,757,961	+		ABI39_RS06340	0.45	-0.3
1,757,962	-		ABI39_RS06340	0.45	-3.5
1,758,033	+		ABI39_RS06340	0.49	+0.2
1,758,034	-		ABI39_RS06340	0.49	+1.2
1,758,311	+		ABI39_RS06340	0.62	+0.1
1,758,312	-		ABI39_RS06340	0.62	-0.1
1,758,362	+		ABI39_RS06340	0.64	+0.2
1,758,377	+		ABI39_RS06340	0.65	+1.3
1,758,390	+		ABI39_RS06340	0.66	-0.1
1,758,542	+		ABI39_RS06340	0.73	+0.1
1,758,543	-		ABI39_RS06340	0.73	+0.4
1,758,590	+		ABI39_RS06340	0.75	+0.8
1,758,592	-		ABI39_RS06340	0.76	+0.7
1,758,594	-		ABI39_RS06340	0.76	+0.2
1,758,696	-		ABI39_RS06340	0.81	-0.2
1,758,712	+		ABI39_RS06340	0.81	+0.5
1,758,925	-				+0.3
1,759,017	+				-0.2
1,759,048	+				+0.4
1,759,080	-				+0.3
1,759,364	-		ABI39_RS06345	0.19	+0.3
1,759,537	-		ABI39_RS06345	0.31	-0.2
1,759,679	+		ABI39_RS06345	0.41	+0.1
1,759,683	-		ABI39_RS06345	0.42	-0.3
1,759,689	-		ABI39_RS06345	0.42	-0.3
1,759,759	-		ABI39_RS06345	0.47	+1.9
1,759,809	-		ABI39_RS06345	0.51	+0.6
1,759,809	-		ABI39_RS06345	0.51	+0.2
1,759,916	+		ABI39_RS06345	0.58	+0.7
1,759,917	-		ABI39_RS06345	0.59	+0.3
1,759,972	-		ABI39_RS06345	0.62	+0.1
1,760,061	+		ABI39_RS06345	0.69	-1.1
1,760,061	+		ABI39_RS06345	0.69	+0.4
1,760,062	-		ABI39_RS06345	0.69	-0.1
1,760,062	-		ABI39_RS06345	0.69	-0.0
1,760,087	-		ABI39_RS06345	0.71	+0.1