Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS11660

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
3,097,246	+		ABI39_RS11655	0.44	+0.1
3,097,247	-		ABI39_RS11655	0.44	+1.7
3,097,277	-		ABI39_RS11655	0.47	+0.1
3,097,583	-		ABI39_RS11655	0.69	-0.5
3,097,597	-		ABI39_RS11655	0.70	+0.1
3,097,597	-		ABI39_RS11655	0.70	-1.2
3,097,601	-		ABI39_RS11655	0.71	-0.5
3,097,662	-		ABI39_RS11655	0.75	+1.1
3,097,685	-		ABI39_RS11655	0.77	+2.1
3,097,685	-		ABI39_RS11655	0.77	+0.1
3,097,713	-		ABI39_RS11655	0.79	-0.5
3,097,788	+		ABI39_RS11655	0.85	+0.5
3,097,951	-				-1.7
3,098,080	-				-1.0
3,098,225	-		ABI39_RS11660	0.17	-0.9
3,098,367	-		ABI39_RS11660	0.30	-0.7
3,098,432	-		ABI39_RS11660	0.36	-0.1
3,098,474	-		ABI39_RS11660	0.40	-1.0
3,098,474	-		ABI39_RS11660	0.40	-0.1
3,098,501	-		ABI39_RS11660	0.42	+0.0
3,098,582	+		ABI39_RS11660	0.50	-1.7
3,098,614	-		ABI39_RS11660	0.53	+0.2
3,098,643	-		ABI39_RS11660	0.55	+0.3
3,098,707	-		ABI39_RS11660	0.61	-1.1
3,098,924	-		ABI39_RS11660	0.81	-1.2
3,098,975	-		ABI39_RS11660	0.85	+1.1
3,099,119	-				-0.2
3,099,161	-				+0.3
3,099,161	-				-0.4
3,099,161	-				-0.2
3,099,163	-				-0.6